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LINC00886 long intergenic non-protein coding RNA 886 [ Homo sapiens (human) ]

Gene ID: 730091, updated on 29-Mar-2018

Summary

Official Symbol
LINC00886provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 886provided by HGNC
Primary source
HGNC:HGNC:48572
See related
Ensembl:ENSG00000240875
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in thyroid (RPKM 2.6), kidney (RPKM 1.4) and 23 other tissues See more

Genomic context

See LINC00886 in Genome Data Viewer
Location:
3q25.31
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 3 NC_000003.12 (156747343..156817062, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (156465132..156534851, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986148 Neighboring gene TCDD inducible poly(ADP-ribose) polymerase Neighboring gene methyltransferase like 15 pseudogene 1 Neighboring gene proliferation-associated 2G4 pseudogene 4 Neighboring gene leucine, glutamate and lysine rich 1 Neighboring gene CASP2 and RIPK1 domain containing adaptor with death domain pseudogene Neighboring gene Kruppel like factor 3 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

General gene information

Markers

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038387.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106708, AK056401, BX115942, CA311498, DA163224
    Related
    ENST00000472943.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p12 Primary Assembly

    Range
    156747343..156817062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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