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LINC00886 long intergenic non-protein coding RNA 886 [ Homo sapiens (human) ]

Gene ID: 730091, updated on 10-Oct-2023

Summary

Official Symbol
LINC00886provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 886provided by HGNC
Primary source
HGNC:HGNC:48572
See related
Ensembl:ENSG00000240875 AllianceGenome:HGNC:48572
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in thyroid (RPKM 2.6), kidney (RPKM 1.4) and 23 other tissues See more
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Genomic context

See LINC00886 in Genome Data Viewer
Location:
3q25.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (156747343..156817062, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (159522010..159591771, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (156465132..156534851, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14836 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14837 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14838 Neighboring gene TIPARP antisense RNA 1 Neighboring gene TCDD inducible poly(ADP-ribose) polymerase Neighboring gene methyltransferase like 15 pseudogene 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:156468641-156469394 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20732 Neighboring gene Sharpr-MPRA regulatory region 2365 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14839 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:156534749-156535948 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14841 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20733 Neighboring gene Sharpr-MPRA regulatory region 161 Neighboring gene proliferation-associated 2G4 pseudogene 4 Neighboring gene leucine, glutamate and lysine rich 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:156684212-156684369 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20734 Neighboring gene KLF3 pseudogene 2 Neighboring gene CRADD pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038387.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106708, AK056401, BX115942, CA311498, DA163224
    Related
    ENST00000472943.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    156747343..156817062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    159522010..159591771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)