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LINC00847 long intergenic non-protein coding RNA 847 [ Homo sapiens (human) ]

Gene ID: 729678, updated on 13-May-2022

Summary

Official Symbol
LINC00847provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 847provided by HGNC
Primary source
HGNC:HGNC:45050
See related
Ensembl:ENSG00000245060 AllianceGenome:HGNC:45050
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 16.8), lymph node (RPKM 9.7) and 25 other tissues See more
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Genomic context

See LINC00847 in Genome Data Viewer
Location:
5q35.3
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (180830957..180835726)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (181387317..181392072)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (180257957..180262726)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase Neighboring gene Sharpr-MPRA regulatory region 14850 Neighboring gene ZFP62 zinc finger protein Neighboring gene hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA Neighboring gene Sharpr-MPRA regulatory region 9005 Neighboring gene uncharacterized LOC124901155

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027183.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC022413
    Related
    ENST00000661444.1
  2. NR_045678.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents use of an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC022413
    Related
    ENST00000501855.6
  3. NR_045679.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents an alternate internal exon, compared to variant 1.
    Source sequence(s)
    AC022413
    Related
    ENST00000502162.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    180830957..180835726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    181387317..181392072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)