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CCDC175 coiled-coil domain containing 175 [ Homo sapiens (human) ]

Gene ID: 729665, updated on 13-Mar-2020

Summary

Official Symbol
CCDC175provided by HGNC
Official Full Name
coiled-coil domain containing 175provided by HGNC
Primary source
HGNC:HGNC:19847
See related
Ensembl:ENSG00000151838
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf38; c14_5395
Expression
Ubiquitous expression in testis (RPKM 3.9), prostate (RPKM 2.8) and 25 other tissues See more
Orthologs

Genomic context

See CCDC175 in Genome Data Viewer
Location:
14q23.1
Exon count:
22
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (59505067..59577276, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (59971785..60043549, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene dishevelled associated activator of morphogenesis 1 Neighboring gene G protein-coupled receptor 135 Neighboring gene trans-L-3-hydroxyproline dehydratase Neighboring gene JNK1/MAPK8 associated membrane protein Neighboring gene reticulon 1 Neighboring gene microRNA 5586 Neighboring gene uncharacterized LOC105370524 Neighboring gene leucine rich repeat containing 9

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

General protein information

Preferred Names
coiled-coil domain-containing protein 175

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164399.2NP_001157871.1  coiled-coil domain-containing protein 175

    See identical proteins and their annotated locations for NP_001157871.1

    Status: VALIDATED

    Source sequence(s)
    AL121694
    Consensus CDS
    CCDS53898.1
    UniProtKB/Swiss-Prot
    P0C221
    Related
    ENSP00000453940.1, ENST00000537690.7
    Conserved Domains (1) summary
    TIGR02168
    Location:80737
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    59505067..59577276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011537120.3XP_011535422.1  coiled-coil domain-containing protein 175 isoform X1

    Conserved Domains (1) summary
    TIGR02168
    Location:66738
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  2. XM_011537124.3XP_011535426.1  coiled-coil domain-containing protein 175 isoform X3

    Conserved Domains (2) summary
    COG1196
    Location:334621
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:66344
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  3. XM_011537122.3XP_011535424.1  coiled-coil domain-containing protein 175 isoform X2

    Conserved Domains (1) summary
    TIGR02168
    Location:66344
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  4. XM_024449705.1XP_024305473.1  coiled-coil domain-containing protein 175 isoform X9

    Conserved Domains (1) summary
    cl25732
    Location:66344
    SMC_N; RecF/RecN/SMC N terminal domain
  5. XM_024449702.1XP_024305470.1  coiled-coil domain-containing protein 175 isoform X6

    Conserved Domains (1) summary
    cl25732
    Location:80582
    SMC_N; RecF/RecN/SMC N terminal domain
  6. XM_024449701.1XP_024305469.1  coiled-coil domain-containing protein 175 isoform X5

    Conserved Domains (1) summary
    cl25732
    Location:80606
    SMC_N; RecF/RecN/SMC N terminal domain
  7. XM_024449703.1XP_024305471.1  coiled-coil domain-containing protein 175 isoform X7

    Conserved Domains (1) summary
    cl25732
    Location:66344
    SMC_N; RecF/RecN/SMC N terminal domain
  8. XM_024449704.1XP_024305472.1  coiled-coil domain-containing protein 175 isoform X8

    Conserved Domains (1) summary
    cl25732
    Location:66344
    SMC_N; RecF/RecN/SMC N terminal domain
  9. XM_011537125.2XP_011535427.1  coiled-coil domain-containing protein 175 isoform X4

    Conserved Domains (1) summary
    TIGR02168
    Location:66592
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  10. XM_017021621.1XP_016877110.1  coiled-coil domain-containing protein 175 isoform X7

    Conserved Domains (1) summary
    cl25732
    Location:66344
    SMC_N; RecF/RecN/SMC N terminal domain
  11. XM_011537130.2XP_011535432.1  coiled-coil domain-containing protein 175 isoform X8

    Conserved Domains (1) summary
    cl25732
    Location:66344
    SMC_N; RecF/RecN/SMC N terminal domain
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