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FAM72A family with sequence similarity 72 member A [ Homo sapiens (human) ]

Gene ID: 729533, updated on 23-Nov-2021

Summary

Official Symbol
FAM72Aprovided by HGNC
Official Full Name
family with sequence similarity 72 member Aprovided by HGNC
Primary source
HGNC:HGNC:24044
See related
Ensembl:ENSG00000196550 MIM:614710
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
p17; LMPIP; Ugene
Expression
Broad expression in lymph node (RPKM 5.1), bone marrow (RPKM 2.8) and 17 other tissues See more
Orthologs
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Genomic context

See FAM72A in Genome Data Viewer
Location:
1q32.1
Exon count:
8
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (206186179..206205773, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (206135557..206155151)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372869 Neighboring gene uncharacterized LOC105372873 Neighboring gene ribosomal protein L22 pseudogene 4 Neighboring gene SLIT-ROBO Rho GTPase activating protein 2 Neighboring gene Sharpr-MPRA regulatory region 15698 duplicate 3 Neighboring gene Sharpr-MPRA regulatory region 356 duplicate 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC46651, MGC57827, MGC169168, MGC182081, MGC182095

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 
located_in intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein FAM72A
Names
LMP1-induced protein
latent membrane protein 1-induced protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123168.3NP_001116640.1  protein FAM72A isoform 1

    See identical proteins and their annotated locations for NP_001116640.1

    Status: VALIDATED

    Source sequence(s)
    AC244035
    Consensus CDS
    CCDS73016.1
    UniProtKB/Swiss-Prot
    Q5TYM5
    Related
    ENSP00000356096.3, ENST00000367128.8
    Conserved Domains (1) summary
    pfam14976
    Location:6149
    FAM72; FAM72 protein
  2. NM_001317901.2NP_001304830.1  protein FAM72A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC244035
    Consensus CDS
    CCDS81420.1
    UniProtKB/Swiss-Prot
    Q5TYM5
    UniProtKB/TrEMBL
    Q5TYM6
    Related
    ENSP00000356097.2, ENST00000367129.6
    Conserved Domains (1) summary
    pfam14976
    Location:49149
    FAM72; FAM72 protein
  3. NM_001385240.1NP_001372169.1  protein FAM72A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC244035
    Conserved Domains (1) summary
    pfam14976
    Location:6149
    FAM72; FAM72 protein
  4. NM_001385241.1NP_001372170.1  protein FAM72A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC244035
    Conserved Domains (1) summary
    pfam14976
    Location:6149
    FAM72; FAM72 protein
  5. NM_001385242.1NP_001372171.1  protein FAM72A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC244035
    Conserved Domains (1) summary
    pfam14976
    Location:6149
    FAM72; FAM72 protein
  6. NM_001385243.1NP_001372172.1  protein FAM72A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC244035
    Conserved Domains (1) summary
    pfam14976
    Location:49149
    FAM72; FAM72 protein
  7. NM_001385244.1NP_001372173.1  protein FAM72A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC244035
    Conserved Domains (1) summary
    pfam14976
    Location:49149
    FAM72; FAM72 protein
  8. NM_001385245.1NP_001372174.1  protein FAM72A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC244035
    Conserved Domains (1) summary
    pfam14976
    Location:49149
    FAM72; FAM72 protein
  9. NM_001385248.1NP_001372177.1  protein FAM72A isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC244035
    Related
    ENSP00000475292.1, ENST00000431655.2
    Conserved Domains (1) summary
    pfam14976
    Location:1120
    FAM72; FAM72 protein
  10. NM_001385249.1NP_001372178.1  protein FAM72A isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC244035
    Conserved Domains (1) summary
    pfam14976
    Location:1120
    FAM72; FAM72 protein
  11. NM_001385251.1NP_001372180.1  protein FAM72A isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC244035
    Related
    ENSP00000340661.5, ENST00000341209.9
    Conserved Domains (1) summary
    pfam14976
    Location:11109
    FAM72; FAM72 protein

RNA

  1. NR_134239.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244035

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    206186179..206205773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024449545.1XP_024305313.1  protein FAM72A isoform X1

    Conserved Domains (1) summary
    pfam14976
    Location:6149
    FAM72; FAM72 protein
  2. XM_011509966.3XP_011508268.1  protein FAM72A isoform X3

    Conserved Domains (1) summary
    pfam14976
    Location:6118
    FAM72; FAM72 protein
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