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AACSP1 acetoacetyl-CoA synthetase pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 729522, updated on 23-Nov-2021

Summary

Official Symbol
AACSP1provided by HGNC
Official Full Name
acetoacetyl-CoA synthetase pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:18226
See related
Ensembl:ENSG00000250420
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AACSL
Expression
Restricted expression toward testis (RPKM 1.9) See more
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Genomic context

See AACSP1 in Genome Data Viewer
Location:
5q35.3
Exon count:
11
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (178764861..178818435, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (178191862..178245436, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Myb/SANT DNA binding domain containing 5 Neighboring gene zinc finger protein 354A Neighboring gene CRISPRi-validated cis-regulatory element chr5.4957 Neighboring gene coiled-coil domain containing 86 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024035.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3' region, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC113348, AC126915, BC024222
    Related
    ENST00000503486.6
  2. NR_135095.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) reprsents the longer transcript.
    Source sequence(s)
    AC113348, AC126915, BC024222, BC140764

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    178764861..178818435 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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