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C1GALT1P1 C1GALT1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 729409, updated on 29-Mar-2023

Summary

Official Symbol
C1GALT1P1provided by HGNC
Official Full Name
C1GALT1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:51614
See related
AllianceGenome:HGNC:51614
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See C1GALT1P1 in Genome Data Viewer
Location:
12q15
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (69284217..69285684)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (69263152..69264620)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (69677997..69679464)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:69401223-69401916 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:69417938-69419137 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:69436381-69436882 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:69436883-69437382 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:69447351-69447948 Neighboring gene transcript overexpressed in dedifferentiated liposarcoma Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:69461643-69462842 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:69509413-69510201 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:69633505-69634085 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:69634086-69634665 Neighboring gene Sharpr-MPRA regulatory region 12312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:69639551-69640050 Neighboring gene cleavage and polyadenylation specific factor 6 Neighboring gene microRNA 1279 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:69725950-69726664 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:69753267-69753870 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:69753871-69754472 Neighboring gene YEATS domain containing 4 Neighboring gene lysozyme Neighboring gene RNA, 7SL, cytoplasmic 804, pseudogene

Genomic regions, transcripts, and products

General gene information

Other Names

  • core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 pseudogene 1
  • core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021725.2 

    Range
    21..1488
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    69284217..69285684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    69263152..69264620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)