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LINC01873 long intergenic non-protein coding RNA 1873 [ Homo sapiens (human) ]

Gene ID: 729348, updated on 17-Jun-2024

Summary

Official Symbol
LINC01873provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1873provided by HGNC
Primary source
HGNC:HGNC:52692
See related
Ensembl:ENSG00000232164 AllianceGenome:HGNC:52692
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01873 in Genome Data Viewer
Location:
2p14
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (66383306..66392450)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (66392069..66401213)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (66610438..66619582)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985812 Neighboring gene microRNA 4778 Neighboring gene E4 enhancer upstream of MEIS1 Neighboring gene Sharpr-MPRA regulatory region 4056 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:66617956-66618568 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:66618569-66619179 Neighboring gene MEIS1 5' regulatory region Neighboring gene MEIS1 antisense RNA 3 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:66666573-66667772 Neighboring gene MEIS1 antisense RNA 2 Neighboring gene Meis homeobox 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130931.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC041424
    Related
    ENST00000428647.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    66383306..66392450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    66392069..66401213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)