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STXBP5-AS1 STXBP5 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 729178, updated on 13-May-2022

Summary

Official Symbol
STXBP5-AS1provided by HGNC
Official Full Name
STXBP5 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44183
See related
Ensembl:ENSG00000233452 AllianceGenome:HGNC:44183
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in brain (RPKM 1.3), bone marrow (RPKM 1.3) and 24 other tissues See more
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Genomic context

See STXBP5-AS1 in Genome Data Viewer
Location:
6q24.3
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (146841388..147204614, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (148034620..148397903, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (147162524..147525750, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene androglobin Neighboring gene uncharacterized LOC105378040 Neighboring gene katanin regulatory subunit B1 like 1 pseudogene 6 Neighboring gene Sharpr-MPRA regulatory region 4352 Neighboring gene Sharpr-MPRA regulatory region 12413 Neighboring gene Sharpr-MPRA regulatory region 4624 Neighboring gene uncharacterized LOC124901422 Neighboring gene lung adenocarcinoma associated transcript 1 Neighboring gene syntaxin binding protein 5 Neighboring gene uncharacterized LOC124901421 Neighboring gene uncharacterized LOC105378043 Neighboring gene YAP1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Other Names

  • STXBP5 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034115.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK091594, BC044307, BQ269903, BU078216, DB318281
    Related
    ENST00000654921.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    146841388..147204614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    148034620..148397903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)