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RGPD4-AS1 RGPD4 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

Gene ID: 729121, updated on 10-Oct-2023

Summary

Official Symbol
RGPD4-AS1provided by HGNC
Official Full Name
RGPD4 antisense RNA 1 (head to head)provided by HGNC
Primary source
HGNC:HGNC:49273
See related
Ensembl:ENSG00000230651 AllianceGenome:HGNC:49273
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 8.8) See more
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Genomic context

See RGPD4-AS1 in Genome Data Viewer
Location:
2q12.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (107823064..107826769, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (108284592..108288289, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (108439520..108443225, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373539 Neighboring gene MPRA-validated peak3808 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr2:108321385-108321583 Neighboring gene gastric cancer associated transcript 1 Neighboring gene Sharpr-MPRA regulatory region 10849 Neighboring gene uncharacterized LOC124906057 Neighboring gene RANBP2 like and GRIP domain containing 4 Neighboring gene ribosomal protein L22 pseudogene 8

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024439.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA962330, AK097754, BC041173
    Related
    ENST00000457647.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    107823064..107826769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    108284592..108288289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)