U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CCDC13-AS2 CCDC13 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 729083, updated on 19-Jul-2022

Summary

Official Symbol
CCDC13-AS2provided by HGNC
Official Full Name
CCDC13 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:53019
See related
Ensembl:ENSG00000225611 AllianceGenome:HGNC:53019
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC02158
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See CCDC13-AS2 in Genome Data Viewer
Location:
3p22.1
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (42770612..42773635)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (42788656..42791682)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (42812104..42815127)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene hedgehog acyltransferase like Neighboring gene HHATL antisense RNA 1 Neighboring gene coiled-coil domain containing 13 Neighboring gene Sharpr-MPRA regulatory region 2509 Neighboring gene CCDC13 antisense RNA 1 Neighboring gene HIG1 hypoxia inducible domain family member 1A Neighboring gene MIX23 pseudogene 4 Neighboring gene Sharpr-MPRA regulatory region 10622 Neighboring gene atypical chemokine receptor 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 2158

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_122070.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099329
    Related
    ENST00000432377.3

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    42770612..42773635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    42788656..42791682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)