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LINC00623 long intergenic non-protein coding RNA 623 [ Homo sapiens (human) ]

Gene ID: 728855, updated on 4-Dec-2022

Summary

Official Symbol
LINC00623provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 623provided by HGNC
Primary source
HGNC:HGNC:44252
See related
AllianceGenome:HGNC:44252
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CH17-118O6.2
Expression
Ubiquitous expression in lymph node (RPKM 5.8), spleen (RPKM 5.8) and 25 other tissues See more
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Genomic context

See LINC00623 in Genome Data Viewer
Location:
1p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (120912238..120955811)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (120921611..120965202)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (144298164..144341756, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RNA, variant U1 small nuclear 19 Neighboring gene uncharacterized LOC124904393 Neighboring gene peptidylprolyl isomerase A like 4A Neighboring gene uncharacterized LOC100996720 Neighboring gene RNA, variant U1 small nuclear 4 Neighboring gene NBPF member 6 pseudogene Neighboring gene PDE4DIP pseudogene 4 Neighboring gene family with sequence similarity 91 member A4, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024510.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC241377, AK311378, DA488546
  2. NR_024511.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal segment in the 3' region, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC241377, BM761975, DA488546
  3. NR_024584.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs at the 5' end and lacks an internal segment in the 3' region, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC241377
  4. NR_109754.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an internal segment in the 3' region, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC241377, BE890886, DA488546

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    120912238..120955811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    120921611..120965202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)