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C1GALT1C1L C1GALT1 specific chaperone 1 like [ Homo sapiens (human) ]

Gene ID: 728819, updated on 25-Jan-2022

Summary

Official Symbol
C1GALT1C1Lprovided by HGNC
Official Full Name
C1GALT1 specific chaperone 1 likeprovided by HGNC
Primary source
HGNC:HGNC:51617
See related
Ensembl:ENSG00000223658 AllianceGenome:HGNC:51617
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Nov 2021]
Orthologs
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Genomic context

See C1GALT1C1L in Genome Data Viewer
Location:
2p21
Exon count:
1
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (43675151..43676429, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (43902290..43903568, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene THADA armadillo repeat containing Neighboring gene RNA, U6 small nuclear 958, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 531, pseudogene Neighboring gene pleckstrin homology, MyTH4 and FERM domain containing H2 Neighboring gene Sharpr-MPRA regulatory region 13975 Neighboring gene zinc finger protein 106 homolog (mouse) pseudogene Neighboring gene RN7SK pseudogene 66

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
C1GALT1-specific chaperone 1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101330.3NP_001094800.1  C1GALT1-specific chaperone 1-like protein

    See identical proteins and their annotated locations for NP_001094800.1

    Status: VALIDATED

    Source sequence(s)
    AC011242
    Consensus CDS
    CCDS82442.1
    UniProtKB/Swiss-Prot
    P0DN25
    Related
    ENSP00000489061.1, ENST00000475092.4

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    43675151..43676429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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