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MIR3171HG MIR3171 host gene [ Homo sapiens (human) ]

Gene ID: 728755, updated on 16-Jan-2024

Summary

Official Symbol
MIR3171HGprovided by HGNC
Official Full Name
MIR3171 host geneprovided by HGNC
Primary source
HGNC:HGNC:56193
See related
Ensembl:ENSG00000292998
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See MIR3171HG in Genome Data Viewer
Location:
14q12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (27321826..27673221, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (21519765..21871223, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (27791032..28142427, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370421 Neighboring gene RPS27A pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:27975337-27975838 Neighboring gene long intergenic non-protein coding RNA 645 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:28142501-28143055 Neighboring gene microRNA 3171 Neighboring gene NANOG hESC enhancer GRCh37_chr14:28590607-28591309 Neighboring gene BCL2 interacting protein 3 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr14:28857194-28858165 Neighboring gene ribosomal protein L26 pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
EBI GWAS Catalog
Genome-wide association with diabetes-related traits in the Framingham Heart Study.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_148991.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356015, DA746241
    Related
    ENST00000554904.5
  2. NR_148992.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356015, BC148262, DA746241
    Related
    ENST00000556890.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    27321826..27673221 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    21519765..21871223 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)