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PDCD6P1 PDCD6 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 728613, updated on 13-May-2022

Summary

Official Symbol
PDCD6P1provided by HGNC
Official Full Name
PDCD6 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:55763
See related
AllianceGenome:HGNC:55763
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 4.0), thyroid (RPKM 4.0) and 25 other tissues See more
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Genomic context

See PDCD6P1 in Genome Data Viewer
Location:
5p15.33
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (1597557..1634005, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (1511560..1548358, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (1597672..1634120, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986397 Neighboring gene SDHA pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 3968 Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2-like Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2-like Neighboring gene uncharacterized LOC112267946 Neighboring gene uncharacterized LOC105374614 Neighboring gene microRNA 4277 Neighboring gene uncharacterized LOC101929003

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003713.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI028226, BC045555, DA140572, DA383480

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    1597557..1634005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    1511560..1548358 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)