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LINC00687 long intergenic non-protein coding RNA 687 [ Homo sapiens (human) ]

Gene ID: 728450, updated on 10-Dec-2024

Summary

Official Symbol
LINC00687provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 687provided by HGNC
Primary source
HGNC:HGNC:16194
See related
Ensembl:ENSG00000228422 AllianceGenome:HGNC:16194
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C20orf61; dJ1012F16.1
Expression
Restricted expression toward testis (RPKM 4.0) See more
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Genomic context

See LINC00687 in Genome Data Viewer
Location:
20p12.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (11809987..11870715, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (11853283..11914008, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (11790635..11851363, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985384 Neighboring gene uncharacterized LOC105372530 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:11696703-11697204 Neighboring gene Sharpr-MPRA regulatory region 1197 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:11745327-11745885 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:11747420-11747958 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:11763635-11764564 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:11773199-11773699 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:11812218-11813417 Neighboring gene RN7SK pseudogene 111 Neighboring gene ANAPC13 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:11905320-11905820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:11905821-11906321 Neighboring gene BTBD3 antisense RNA 1 Neighboring gene BTB domain containing 3 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:12033906-12035105 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:12046496-12047045 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr20:12054402-12055601 Neighboring gene uncharacterized LOC124904869

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110635.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL080274
    Related
    ENST00000557899.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    11809987..11870715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    11853283..11914008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)