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TSPY4 testis specific protein Y-linked 4 [ Homo sapiens (human) ]

Gene ID: 728395, updated on 15-Jul-2021

Summary

Official Symbol
TSPY4provided by HGNC
Official Full Name
testis specific protein Y-linked 4provided by HGNC
Primary source
HGNC:HGNC:37287
See related
Ensembl:ENSG00000233803
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TSPY8; TSPY10
Expression
Restricted expression toward testis (RPKM 40.8) See more
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Genomic context

See TSPY4 in Genome Data Viewer
Location:
Yp11.2
Exon count:
6
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) Y NC_000024.10 (9337489..9340285)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (9175119..9177887)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein Y-linked family 1 member A3, pseudogene Neighboring gene RNA binding motif protein Y-linked family 1 member G, pseudogene Neighboring gene testis-specific transcript, Y-linked 20 Neighboring gene family with sequence similarity 197 Y-linked member 8 Neighboring gene testis specific protein Y-linked 8

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Clone Names

  • FLJ36094

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables histone binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in gonadal mesoderm development IEA
Inferred from Electronic Annotation
more info
 
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in chromatin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
testis-specific Y-encoded protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164471.2NP_001157943.1  testis-specific Y-encoded protein 4

    See identical proteins and their annotated locations for NP_001157943.1

    Status: VALIDATED

    Source sequence(s)
    AC006158
    Consensus CDS
    CCDS48202.1
    UniProtKB/Swiss-Prot
    P0CV99, P0CW01
    Related
    ENSP00000399668.2, ENST00000426950.6
    Conserved Domains (1) summary
    cl08298
    Location:132294
    NAP; Nucleosome assembly protein (NAP)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p13 Primary Assembly

    Range
    9337489..9340285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005272743.4XP_005272800.1  testis-specific Y-encoded protein 4 isoform X1

    UniProtKB/TrEMBL
    A6NEC3
    Related
    ENSP00000372471.1, ENST00000383008.1
    Conserved Domains (1) summary
    cl08298
    Location:109279
    NAP; Nucleosome assembly protein (NAP)
  2. XM_017030065.1XP_016885554.1  testis-specific Y-encoded protein 4 isoform X2

RNA

  1. XR_001756006.1 RNA Sequence

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