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CLEC19A C-type lectin domain containing 19A [ Homo sapiens (human) ]

Gene ID: 728276, updated on 11-Jun-2021

Summary

Official Symbol
CLEC19Aprovided by HGNC
Official Full Name
C-type lectin domain containing 19Aprovided by HGNC
Primary source
HGNC:HGNC:34522
See related
Ensembl:ENSG00000261210
Gene type
protein coding
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See CLEC19A in Genome Data Viewer
Location:
16p12.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (19285731..19310947)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (19297053..19322269)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ITPRIP like 2 Neighboring gene synaptotagmin 17 Neighboring gene uncharacterized LOC105371114 Neighboring gene long intergenic non-protein coding RNA 2858 Neighboring gene transmembrane channel like 5 Neighboring gene RNA, U4 small nuclear 46, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • AC003003.5, DKFZp686A05212

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
C-type lectin domain family 19 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256720.2NP_001243649.1  C-type lectin domain family 19 member A precursor

    See identical proteins and their annotated locations for NP_001243649.1

    Status: INFERRED

    Source sequence(s)
    AC003003, BC119018, BX640722
    Consensus CDS
    CCDS81953.1
    UniProtKB/TrEMBL
    A0A1B0GV53
    Related
    ENSP00000490375.1, ENST00000636231.2
    Conserved Domains (1) summary
    cd03589
    Location:40180
    CLECT_CEL-1_like; C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    19285731..19310947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_024436.1: Suppressed sequence

    Description
    NR_024436.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
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