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CARMN cardiac mesoderm enhancer-associated non-coding RNA [ Homo sapiens (human) ]

Gene ID: 728264, updated on 22-Jan-2023

Summary

Official Symbol
CARMNprovided by HGNC
Official Full Name
cardiac mesoderm enhancer-associated non-coding RNAprovided by HGNC
Primary source
HGNC:HGNC:42872
See related
AllianceGenome:HGNC:42872
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CARMEN; MIR143HG
Summary
Predicted to be involved in regulation of gene expression. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in endometrium (RPKM 8.6), prostate (RPKM 5.7) and 18 other tissues See more
Orthologs
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Genomic context

See CARMN in Genome Data Viewer
Location:
5q32
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (149406845..149432836)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (149941690..149967678)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (148786408..148812399)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene prenylcysteine oxidase 1 like Neighboring gene Sharpr-MPRA regulatory region 12528 Neighboring gene uncharacterized LOC101927046 Neighboring gene interleukin 17B Neighboring gene VISTA enhancer hs1752 Neighboring gene Sharpr-MPRA regulatory region 1487 Neighboring gene microRNA 143 Neighboring gene microRNA 145 Neighboring gene Sharpr-MPRA regulatory region 14097 Neighboring gene Sharpr-MPRA regulatory region 12996

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Other Names

  • MIR143 and MIR145 host
  • MIR143 host gene (non-protein coding)
  • cardiac mesoderm enhancer-associated noncoding RNA

Clone Names

  • FLJ36638, FLJ42808, FLJ44577, DKFZp781L018, DKFZp586C0721, DKFZp686L22126

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in miRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_105059.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AI674543, HQ848934
  2. NR_105060.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AI674543, HQ848935

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    149406845..149432836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    149941690..149967678
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_027180.1: Suppressed sequence

    Description
    NR_027180.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.