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FAM245A family with sequence similarity 245 member A [ Homo sapiens (human) ]

Gene ID: 728218, updated on 10-Oct-2023

Summary

Official Symbol
FAM245Aprovided by HGNC
Official Full Name
family with sequence similarity 245 member Aprovided by HGNC
Primary source
HGNC:HGNC:45163
See related
Ensembl:ENSG00000228055 AllianceGenome:HGNC:45163
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00864
Expression
Biased expression in kidney (RPKM 2.7), liver (RPKM 0.9) and 1 other tissue See more
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Genomic context

See FAM245A in Genome Data Viewer
Location:
10q23.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (87396574..87407700, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (88280173..88291295, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (89156331..89167457, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:89142841-89143342 Neighboring gene nuclear pore associated protein 1 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:89150255-89151229 Neighboring gene cathepsin L pseudogene 1 Neighboring gene MPRA-validated peak1047 silencer Neighboring gene uncharacterized LOC112268063 Neighboring gene Sharpr-MPRA regulatory region 7232 Neighboring gene uncharacterized LOC112268064 Neighboring gene CRISPRi-validated cis-regulatory element chr10.3228 Neighboring gene microRNA 4678

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 864

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046091.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC065757
    Related
    ENST00000662339.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    87396574..87407700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    88280173..88291295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)