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MAFIP MAFF interacting protein [ Homo sapiens (human) ]

Gene ID: 727764, updated on 17-Jun-2024

Summary

Official Symbol
MAFIPprovided by HGNC
Official Full Name
MAFF interacting proteinprovided by HGNC
Primary source
HGNC:HGNC:31102
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MIP; pp5644; TEKT4P4
Summary
This gene was originally thought to be a protein coding gene. However, the encoded protein sequence is highly similar to the C-terminal sequence of the tektin-4 protein, and the transcript sequences of this gene are highly similar to the TEKT4 pseudogenes, which are found on chromosomes 4, 21 and Y, respectively. Therefore, this gene is thought to be another pseudogene of the TEKT4 gene (GeneID:150483). Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Mar 2012]
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Genomic context

See MAFIP in Genome Data Viewer
Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 Unlocalized Scaffold NT_113888.1 (53589..115073, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (2929065..2991090, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 Unlocalized Scaffold NT_113888.1 (53589..115073, complement)

NT_113888.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C2orf27A-like Neighboring gene uncharacterized LOC105379274 Neighboring gene ankyrin repeat domain-containing protein SOWAHC-like

Genomic regions, transcripts, and products

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • MAFF interacting protein (pseudogene)
  • tektin 4 pseudogene 4
  • tektin-4 like protein PP5644

Clone Names

  • FLJ00219, FLJ39633

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in cilium movement involved in cell motility IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046439.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC145212, AF289559, AK096952, CK004054
  2. NR_046440.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks several internal exons compared to variant 1.
    Source sequence(s)
    AC145212, AF289559, CK004054, DQ786282
  3. NR_046441.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks several internal exons and has a different 3' structure compared to variant 1.
    Source sequence(s)
    AC145212, AF289559, CK004054
  4. NR_046442.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks several 3' exons and has an alternate 3' terminal exon compared to variant 1.
    Source sequence(s)
    AC145212, CA419667, CK004054, DA007572

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NT_113888.1 Reference GRCh38.p14 Primary Assembly

    Range
    53589..115073 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    2929065..2991090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001190825.1: Suppressed sequence

    Description
    NM_001190825.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.