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Ccdc12 coiled-coil domain containing 12 [ Mus musculus (house mouse) ]

Gene ID: 72654, updated on 5-Mar-2024

Summary

Official Symbol
Ccdc12provided by MGI
Official Full Name
coiled-coil domain containing 12provided by MGI
Primary source
MGI:MGI:1919904
See related
Ensembl:ENSMUSG00000019659 AllianceGenome:MGI:1919904
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2700094L05Rik
Summary
Predicted to be part of U2-type spliceosomal complex and post-mRNA release spliceosomal complex. Orthologous to human CCDC12 (coiled-coil domain containing 12). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 43.2), bladder adult (RPKM 32.1) and 28 other tissues See more
Orthologs
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Genomic context

Location:
9 60.37 cM; 9 F2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (110483376..110540661)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (110654308..110711593)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_25267 Neighboring gene neurotrophin receptor associated death domain Neighboring gene neurobeachin-like 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:110547743-110548020 Neighboring gene microRNA 8107 Neighboring gene STARR-positive B cell enhancer ABC_E2308 Neighboring gene STARR-positive B cell enhancer ABC_E8949 Neighboring gene predicted gene, 35715 Neighboring gene parathyroid hormone 1 receptor Neighboring gene predicted gene, 35775 Neighboring gene myosin, light polypeptide 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
part_of U2-type spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of post-mRNA release spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028312.3NP_082588.2  coiled-coil domain-containing protein 12

    See identical proteins and their annotated locations for NP_082588.2

    Status: VALIDATED

    Source sequence(s)
    AK012610, BE627582, CA450868
    Consensus CDS
    CCDS23570.1
    UniProtKB/Swiss-Prot
    Q8R344, Q9CZH5
    Related
    ENSMUSP00000019803.5, ENSMUST00000019803.9
    Conserved Domains (1) summary
    pfam08315
    Location:11143
    cwf18; cwf18 pre-mRNA splicing factor

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    110483376..110540661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030244635.1XP_030100495.1  coiled-coil domain-containing protein 12 isoform X1

    UniProtKB/Swiss-Prot
    Q8R344, Q9CZH5
    Conserved Domains (1) summary
    pfam08315
    Location:11143
    cwf18; cwf18 pre-mRNA splicing factor
  2. XM_030244636.1XP_030100496.1  coiled-coil domain-containing protein 12 isoform X1

    UniProtKB/Swiss-Prot
    Q8R344, Q9CZH5
    Conserved Domains (1) summary
    pfam08315
    Location:11143
    cwf18; cwf18 pre-mRNA splicing factor