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Anks3 ankyrin repeat and sterile alpha motif domain containing 3 [ Mus musculus (house mouse) ]

Gene ID: 72615, updated on 23-Jun-2021

Summary

Official Symbol
Anks3provided by MGI
Official Full Name
ankyrin repeat and sterile alpha motif domain containing 3provided by MGI
Primary source
MGI:MGI:1919865
See related
Ensembl:ENSMUSG00000022515
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C81345; mKIAA1977; 2700067D09Rik
Expression
Ubiquitous expression in CNS E14 (RPKM 12.6), CNS E18 (RPKM 12.3) and 28 other tissues See more
Orthologs
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Genomic context

See Anks3 in Genome Data Viewer
Location:
16 A1; 16 2.48 cM
Exon count:
18
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (4759279..4783362, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (4941415..4965537, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (4941420..4964330, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene mahogunin, ring finger 1 Neighboring gene predicted gene, 16861 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1 Neighboring gene predicted gene, 36681 Neighboring gene dynein axonemal assembly factor 8 Neighboring gene septin 12 Neighboring gene small integral membrane protein 22

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cilium IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
ankyrin repeat and SAM domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028301.4NP_082577.2  ankyrin repeat and SAM domain-containing protein 3

    See identical proteins and their annotated locations for NP_082577.2

    Status: VALIDATED

    Source sequence(s)
    BC050929, BY287049, BY602342
    Consensus CDS
    CCDS27928.1
    UniProtKB/Swiss-Prot
    Q9CZK6
    Related
    ENSMUSP00000023157.5, ENSMUST00000023157.6
    Conserved Domains (6) summary
    cd09519
    Location:423486
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    smart00454
    Location:422481
    SAM; Sterile alpha motif
    cd00204
    Location:63189
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:106199
    Ank_2; Ankyrin repeats (3 copies)
    pfam15134
    Location:512608
    DUF4570; Domain of unknown function (DUF4570)
    sd00045
    Location:6999
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    4759279..4783362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522608.2XP_006522671.1  ankyrin repeat and SAM domain-containing protein 3 isoform X1

    Conserved Domains (5) summary
    cd09519
    Location:423486
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    COG0666
    Location:29192
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:6999
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:169221
    Ank_4; Ankyrin repeats (many copies)
    pfam15134
    Location:512608
    DUF4570; Domain of unknown function (DUF4570)
  2. XM_006522610.3XP_006522673.1  ankyrin repeat and SAM domain-containing protein 3 isoform X3

    Conserved Domains (5) summary
    cd09519
    Location:423486
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    COG0666
    Location:29192
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:6999
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:169221
    Ank_4; Ankyrin repeats (many copies)
    pfam15134
    Location:512608
    DUF4570; Domain of unknown function (DUF4570)
  3. XM_036160143.1XP_036016036.1  ankyrin repeat and SAM domain-containing protein 3 isoform X8

    Conserved Domains (3) summary
    cd09519
    Location:350413
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    sd00045
    Location:2859
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:33126
    Ank_2; Ankyrin repeats (3 copies)
  4. XM_030249288.2XP_030105148.1  ankyrin repeat and SAM domain-containing protein 3 isoform X7

    Conserved Domains (5) summary
    cd09519
    Location:362425
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    PLN03192
    Location:16185
    PLN03192; Voltage-dependent potassium channel; Provisional
    sd00045
    Location:73104
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:62138
    Ank_2; Ankyrin repeats (3 copies)
    pfam15134
    Location:451547
    DUF4570; Domain of unknown function (DUF4570)
  5. XM_036160146.1XP_036016039.1  ankyrin repeat and SAM domain-containing protein 3 isoform X14

    Conserved Domains (2) summary
    cd09519
    Location:250313
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    cl39094
    Location:148
    Ank_2; Ankyrin repeats (3 copies)
  6. XM_006522609.4XP_006522672.1  ankyrin repeat and SAM domain-containing protein 3 isoform X2

    Conserved Domains (5) summary
    cd09519
    Location:423486
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    COG0666
    Location:29192
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:6999
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:169221
    Ank_4; Ankyrin repeats (many copies)
    pfam15134
    Location:512608
    DUF4570; Domain of unknown function (DUF4570)
  7. XM_030249290.2XP_030105150.1  ankyrin repeat and SAM domain-containing protein 3 isoform X9

    Conserved Domains (5) summary
    cd09519
    Location:362425
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    PLN03192
    Location:16185
    PLN03192; Voltage-dependent potassium channel; Provisional
    sd00045
    Location:73104
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:62138
    Ank_2; Ankyrin repeats (3 copies)
    pfam15134
    Location:451547
    DUF4570; Domain of unknown function (DUF4570)
  8. XM_030249287.1XP_030105147.1  ankyrin repeat and SAM domain-containing protein 3 isoform X6

    Conserved Domains (5) summary
    cd09519
    Location:362425
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    PLN03192
    Location:16185
    PLN03192; Voltage-dependent potassium channel; Provisional
    sd00045
    Location:73104
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:62138
    Ank_2; Ankyrin repeats (3 copies)
    pfam15134
    Location:451547
    DUF4570; Domain of unknown function (DUF4570)
  9. XM_006522611.5XP_006522674.1  ankyrin repeat and SAM domain-containing protein 3 isoform X4

    Conserved Domains (5) summary
    cd09519
    Location:362425
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    PLN03192
    Location:16185
    PLN03192; Voltage-dependent potassium channel; Provisional
    sd00045
    Location:73104
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:62138
    Ank_2; Ankyrin repeats (3 copies)
    pfam15134
    Location:451547
    DUF4570; Domain of unknown function (DUF4570)
  10. XM_030249289.2XP_030105149.1  ankyrin repeat and SAM domain-containing protein 3 isoform X8

    Conserved Domains (3) summary
    cd09519
    Location:350413
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    sd00045
    Location:2859
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:33126
    Ank_2; Ankyrin repeats (3 copies)
  11. XM_006522612.3XP_006522675.1  ankyrin repeat and SAM domain-containing protein 3 isoform X5

    Conserved Domains (4) summary
    cd09519
    Location:350413
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    sd00045
    Location:2859
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:33126
    Ank_2; Ankyrin repeats (3 copies)
    pfam15134
    Location:439535
    DUF4570; Domain of unknown function (DUF4570)
  12. XM_036160145.1XP_036016038.1  ankyrin repeat and SAM domain-containing protein 3 isoform X12

    Conserved Domains (3) summary
    cd09519
    Location:294357
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    sd00045
    Location:536
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:170
    Ank_2; Ankyrin repeats (3 copies)
  13. XM_006522613.4XP_006522676.1  ankyrin repeat and SAM domain-containing protein 3 isoform X10

    Conserved Domains (4) summary
    cd09519
    Location:294357
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    sd00045
    Location:536
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:170
    Ank_2; Ankyrin repeats (3 copies)
    pfam15134
    Location:383479
    DUF4570; Domain of unknown function (DUF4570)
  14. XM_030249291.2XP_030105151.1  ankyrin repeat and SAM domain-containing protein 3 isoform X11

    Conserved Domains (3) summary
    cd09519
    Location:250313
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    pfam12796
    Location:148
    Ank_2; Ankyrin repeats (3 copies)
    pfam15134
    Location:339435
    DUF4570; Domain of unknown function (DUF4570)
  15. XM_030249294.2XP_030105154.1  ankyrin repeat and SAM domain-containing protein 3 isoform X13

    Conserved Domains (3) summary
    cd09519
    Location:250313
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    pfam12796
    Location:148
    Ank_2; Ankyrin repeats (3 copies)
    pfam15134
    Location:339435
    DUF4570; Domain of unknown function (DUF4570)
  16. XM_030249292.2XP_030105152.1  ankyrin repeat and SAM domain-containing protein 3 isoform X11

    Conserved Domains (3) summary
    cd09519
    Location:250313
    SAM_ANKS3; SAM domain of ANKS3 subfamily
    pfam12796
    Location:148
    Ank_2; Ankyrin repeats (3 copies)
    pfam15134
    Location:339435
    DUF4570; Domain of unknown function (DUF4570)

RNA

  1. XR_004939242.1 RNA Sequence

  2. XR_004939236.1 RNA Sequence

  3. XR_004939235.1 RNA Sequence

  4. XR_004939234.1 RNA Sequence

  5. XR_004939239.1 RNA Sequence

  6. XR_004939238.1 RNA Sequence

  7. XR_003951838.1 RNA Sequence

  8. XR_004939237.1 RNA Sequence

  9. XR_004939241.1 RNA Sequence

  10. XR_004939240.1 RNA Sequence

  11. XR_003951841.1 RNA Sequence

  12. XR_003951840.1 RNA Sequence

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