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TSPYL1 TSPY like 1 [ Homo sapiens (human) ]

Gene ID: 7259, updated on 12-Oct-2019

Summary

Official Symbol
TSPYL1provided by HGNC
Official Full Name
TSPY like 1provided by HGNC
Primary source
HGNC:HGNC:12382
See related
Ensembl:ENSG00000189241 MIM:604714
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TSPYL
Summary
The protein encoded by this gene is found in the nucleolus and is similar to that of a family of genes on the Y-chromosome. This gene is intronless. Defects in this gene are a cause of sudden infant death with dysgenesis of the testes syndrome (SIDDT). [provided by RefSeq, Dec 2009]
Orthologs

Genomic context

See TSPYL1 in Genome Data Viewer
Location:
6q22.1
Exon count:
1
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (116274859..116280117, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (116596022..116601280, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein S5 pseudogene Neighboring gene uncharacterized LOC112267965 Neighboring gene ribosomal protein S5 pseudogene 1 Neighboring gene dermatan sulfate epimerase Neighboring gene uncharacterized LOC100287467 Neighboring gene chromobox 3 pseudogene 9

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Vpr vpr HIV-1 Vpr interacts with TSPYL1 and C20orf94 subunits of the SLX4 complex in Vpr-expressing THP-1 cells PubMed

Go to the HIV-1, Human Interaction Database

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enzyme binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleolus IDA
Inferred from Direct Assay
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
testis-specific Y-encoded-like protein 1
Names
TSPY-like protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016217.1 RefSeqGene

    Range
    5001..10259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics), LRG_862

mRNA and Protein(s)

  1. NM_003309.4NP_003300.1  testis-specific Y-encoded-like protein 1

    See identical proteins and their annotated locations for NP_003300.1

    Status: REVIEWED

    Source sequence(s)
    AL050331
    Consensus CDS
    CCDS34518.1
    UniProtKB/Swiss-Prot
    Q9H0U9
    Related
    ENSP00000357597.3, ENST00000368608.3
    Conserved Domains (1) summary
    pfam00956
    Location:228409
    NAP; Nucleosome assembly protein (NAP)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    116274859..116280117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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