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Hsdl2 hydroxysteroid dehydrogenase like 2 [ Mus musculus (house mouse) ]

Gene ID: 72479, updated on 31-Jan-2019

Summary

Official Symbol
Hsdl2provided by MGI
Official Full Name
hydroxysteroid dehydrogenase like 2provided by MGI
Primary source
MGI:MGI:1919729
See related
Ensembl:ENSMUSG00000028383
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2610207I16Rik
Expression
Ubiquitous expression in heart adult (RPKM 26.3), bladder adult (RPKM 20.5) and 25 other tissues See more
Orthologs

Genomic context

See Hsdl2 in Genome Data Viewer
Location:
4; 4 B3
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (59581326..59618694)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (59594435..59631566)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene sushi domain containing 1 Neighboring gene zinc finger, MYND domain containing 19 pseudogene Neighboring gene polypyrimidine tract binding protein 3 Neighboring gene RIKEN cDNA E130308A19 gene Neighboring gene INTS3 and NABP interacting protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
mitochondrion HDA PubMed 
peroxisome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
hydroxysteroid dehydrogenase-like protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001301367.1NP_001288296.1  hydroxysteroid dehydrogenase-like protein 2 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an additional exon in the 5' region, which causes translation initiation at a downstream in-frame start codon, compared to variant 1. The encoded protein (isoform 2) is shorter at the N-terminus than isoform 1.
    Source sequence(s)
    AL806512, BX005031
    Consensus CDS
    CCDS80104.1
    UniProtKB/TrEMBL
    B1AX78
    Related
    ENSMUSP00000103152.1, ENSMUST00000107528.7
    Conserved Domains (2) summary
    pfam02036
    Location:270363
    SCP2; SCP-2 sterol transfer family
    cl21454
    Location:1128
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
  2. NM_024255.3NP_077217.2  hydroxysteroid dehydrogenase-like protein 2 isoform 1

    See identical proteins and their annotated locations for NP_077217.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer isoform (1).
    Source sequence(s)
    AA545425, AY725196, BE944922, BY327952
    Consensus CDS
    CCDS38772.1
    UniProtKB/Swiss-Prot
    Q2TPA8
    Related
    ENSMUSP00000030078.5, ENSMUST00000030078.11
    Conserved Domains (3) summary
    cd09762
    Location:8248
    HSDL2_SDR_c; human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs
    pfam00106
    Location:12197
    adh_short; short chain dehydrogenase
    pfam02036
    Location:390483
    SCP2; SCP-2 sterol transfer family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

    Range
    59581326..59618694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006538277.2XP_006538340.1  hydroxysteroid dehydrogenase-like protein 2 isoform X2

    Conserved Domains (3) summary
    pfam00106
    Location:12164
    adh_short; short chain dehydrogenase
    pfam02036
    Location:357450
    SCP2; SCP-2 sterol transfer family
    cl21454
    Location:8215
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
  2. XM_017320391.1XP_017175880.1  hydroxysteroid dehydrogenase-like protein 2 isoform X1

    Conserved Domains (3) summary
    cd09762
    Location:8248
    HSDL2_SDR_c; human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs
    pfam00106
    Location:12197
    adh_short; short chain dehydrogenase
    pfam02036
    Location:390456
    SCP2; SCP-2 sterol transfer family
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