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Ccdc71 coiled-coil domain containing 71 [ Mus musculus (house mouse) ]

Gene ID: 72454, updated on 5-Mar-2024

Summary

Official Symbol
Ccdc71provided by MGI
Official Full Name
coiled-coil domain containing 71provided by MGI
Primary source
MGI:MGI:1919704
See related
Ensembl:ENSMUSG00000049305 AllianceGenome:MGI:1919704
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2600016J21Rik
Summary
Orthologous to human CCDC71 (coiled-coil domain containing 71). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 13.7), adrenal adult (RPKM 12.4) and 28 other tissues See more
Orthologs
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Genomic context

See Ccdc71 in Genome Data Viewer
Location:
9 F2; 9 59.38 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (108329701..108343145)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (108452502..108465946)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene interactor of HORMAD1 1 Neighboring gene predicted gene, 25456 Neighboring gene cDNA sequence BC048562 Neighboring gene kelch domain containing 8B Neighboring gene microRNA 12206 Neighboring gene laminin, beta 2 Neighboring gene STARR-positive B cell enhancer ABC_E2916 Neighboring gene ubiquitin specific peptidase 19

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General protein information

Preferred Names
coiled-coil domain-containing protein 71

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378930.1NP_001365859.1  coiled-coil domain-containing protein 71

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. All three variants encode the same protein.
    Source sequence(s)
    AC161260
    UniProtKB/Swiss-Prot
    Q3UDX1, Q8VEG0
    Conserved Domains (1) summary
    pfam15374
    Location:8430
    CCDC71L; Coiled-coil domain-containing protein 71L
  2. NM_001378931.1NP_001365860.1  coiled-coil domain-containing protein 71

    Status: VALIDATED

    Source sequence(s)
    AC161260
    UniProtKB/Swiss-Prot
    Q3UDX1, Q8VEG0
    Related
    ENSMUSP00000142230.2, ENSMUST00000193170.2
    Conserved Domains (1) summary
    pfam15374
    Location:8430
    CCDC71L; Coiled-coil domain-containing protein 71L
  3. NM_133744.5NP_598505.1  coiled-coil domain-containing protein 71

    See identical proteins and their annotated locations for NP_598505.1

    Status: VALIDATED

    Source sequence(s)
    AC161260
    Consensus CDS
    CCDS23527.1
    UniProtKB/Swiss-Prot
    Q3UDX1, Q8VEG0
    Related
    ENSMUSP00000057891.6, ENSMUST00000061209.7
    Conserved Domains (1) summary
    pfam15374
    Location:8430
    CCDC71L; Coiled-coil domain-containing protein 71L

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    108329701..108343145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)