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SNHG4 small nucleolar RNA host gene 4 [ Homo sapiens (human) ]

Gene ID: 724102, updated on 22-Aug-2021

Summary

Official Symbol
SNHG4provided by HGNC
Official Full Name
small nucleolar RNA host gene 4provided by HGNC
Primary source
HGNC:HGNC:32964
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U19H; NCRNA00059
Expression
Ubiquitous expression in lymph node (RPKM 2.0), appendix (RPKM 1.6) and 23 other tissues See more
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Genomic context

See SNHG4 in Genome Data Viewer
Location:
5q31.2
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (139273752..139283184)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (138609441..138618873)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene SIL1 nucleotide exchange factor Neighboring gene ribosomal protein L12 pseudogene 21 Neighboring gene RNA, U6 small nuclear 572, pseudogene Neighboring gene small nucleolar RNA, H/ACA box 74D Neighboring gene small nucleolar RNA, H/ACA box 74A Neighboring gene matrin 3 Neighboring gene RNA, 5S ribosomal pseudogene 195 Neighboring gene RN7SK pseudogene 64

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough MATR3

Readthrough gene: MATR3

Other Names

  • U19 host
  • small nucleolar RNA host gene (non-protein coding) 4
  • small nucleolar RNA host gene 4 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003141.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC011404, AJ224167, CN337312, DA203569
  2. NR_036536.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs at its 3' end compared to variant 1.
    Source sequence(s)
    AC011404, AJ224168

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    139273752..139283184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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