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gipc3 GIPC PDZ domain containing family, member 3 [ Danio rerio (zebrafish) ]

Gene ID: 724013, updated on 1-Aug-2018

Summary

Official Symbol
gipc3provided by ZNC
Official Full Name
GIPC PDZ domain containing family, member 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-060616-326
See related
Ensembl:ENSDARG00000053074 Vega:OTTDARG00000029055
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:136839; CH1073-422L2.1
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See gipc3 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (3303669..3328241)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (3284401..3308973)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene si:zfos-943e10.1 Neighboring gene G protein-coupled receptor 35, tandem duplicate 1 Neighboring gene thromboxane A2 receptor Neighboring gene uncharacterized LOC108179142

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
PDZ domain-containing protein GIPC3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045318.1NP_001038783.1  PDZ domain-containing protein GIPC3

    See identical proteins and their annotated locations for NP_001038783.1

    Status: PROVISIONAL

    Source sequence(s)
    BC117655
    UniProtKB/TrEMBL
    Q1ECV5
    Related
    ENSDARP00000069534.4, OTTDARP00000031829, ENSDART00000075049.5, OTTDART00000039813
    Conserved Domains (1) summary
    cd00992
    Location:132204
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    3303669..3328241
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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