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2200002D01Rik RIKEN cDNA 2200002D01 gene [ Mus musculus (house mouse) ]

Gene ID: 72275, updated on 17-Aug-2024

Summary

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Official Symbol
2200002D01Rikprovided by MGI
Official Full Name
RIKEN cDNA 2200002D01 geneprovided by MGI
Primary source
MGI:MGI:1919525
See related
Ensembl:ENSMUSG00000030587 AllianceGenome:MGI:1919525
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
IMUP; H2RSP; IMUP-1; IMUP-2; 2010005J02Rik
Summary
Located in nucleolus. Orthologous to human C19orf33 (chromosome 19 open reading frame 33). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in duodenum adult (RPKM 479.1), small intestine adult (RPKM 313.9) and 5 other tissues See more
Orthologs
human all
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Genomic context

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Location:
7 B1; 7 16.94 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (28946946..28947892, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (29247521..29248467, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene cation channel sperm associated auxiliary subunit gamma 1 Neighboring gene STARR-positive B cell enhancer ABC_E10433 Neighboring gene STARR-positive B cell enhancer ABC_E4913 Neighboring gene STARR-seq mESC enhancer starr_18461 Neighboring gene potassium inwardly-rectifying channel, subfamily K, member 6 Neighboring gene STARR-positive B cell enhancer ABC_E544 Neighboring gene Yip1 interacting factor homolog B (S. cerevisiae) Neighboring gene serine protease inhibitor, Kunitz type 2 Neighboring gene predicted gene, 45977

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Characterization of transcripts generated from mouse hepatocyte growth factor activator inhibitor type 2 (HAI-2) and HAI-2-related small peptide (H2RSP) genes: chimeric mRNA transcribed from both HAI-2 and H2RSP genes is detected in human but not in mouse. Naganuma S, et al. Biochem Biophys Res Commun, 2003 Mar 7. PMID 12604353
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
immortalization up-regulated protein
Names
HAI-2 related small protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028179.1 → NP_082455.1  immortalization up-regulated protein

    See identical proteins and their annotated locations for NP_082455.1

    Status: VALIDATED

    Source sequence(s)
    AK008617, BC086934, BE851006
    Consensus CDS
    CCDS52172.1
    UniProtKB/TrEMBL
    Q9D809
    Related
    ENSMUSP00000032808.5, ENSMUST00000032808.6
    Conserved Domains (1) summary
    pfam15761
    Location:1 → 82
    IMUP; Immortalization up-regulated protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    28946946..28947892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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