Format

Send to:

Choose Destination

1700021F07Rik RIKEN cDNA 1700021F07 gene [ Mus musculus (house mouse) ]

Gene ID: 72221, updated on 29-Oct-2020

Summary

Official Symbol
1700021F07Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700021F07 geneprovided by MGI
Primary source
MGI:MGI:1919471
See related
Ensembl:ENSMUSG00000027518
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 93.4) See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See 1700021F07Rik in Genome Data Viewer
Location:
2; 2 H4
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (173364385..173370295)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (173522592..173528502)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (173348093..173354003)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 29859 Neighboring gene predicted gene 14642 Neighboring gene uncharacterized LOC118568485 Neighboring gene ankyrin repeat domain 60

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C20orf85 homolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028158.1NP_082434.1  uncharacterized protein C20orf85 homolog

    See identical proteins and their annotated locations for NP_082434.1

    Status: VALIDATED

    Source sequence(s)
    AL807384, BC050790, CN835193
    Consensus CDS
    CCDS50814.1
    UniProtKB/Swiss-Prot
    Q9DA42
    Related
    ENSMUSP00000029023.3, ENSMUST00000029023.3
    Conserved Domains (1) summary
    pfam14945
    Location:16134
    LLC1; Normal lung function maintenance, Low in Lung Cancer 1 protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    173364385..173370295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center