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PHATRDRAFT_13175 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7201869, updated on 21-Dec-2023
Gene symbol
PHATRDRAFT_13175
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_13175
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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See PHATRDRAFT_13175 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Sequence:
Chromosome: 10; NC_011678.1 (854237..855496, complement)

Chromosome 10 - NC_011678.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic Sequence:
NC_011678.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aromatic amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Names
hypothetical protein

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011678.1 Reference assembly

    Range
    854237..855496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002181050.1 → XP_002181086.1  predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002181086.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G1T1
    Conserved Domains (2) summary
    cd04880
    Location:3 → 74
    ACT_AAAH-PDT-like; ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)
    cl01244
    Location:81 → 391
    arom_aa_hydroxylase; Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan ...
Nucleotide Protein
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