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AroB 3-dehydroquinate synthase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7201792, updated on 3-Jun-2026
Gene symbol
AroB
Gene description
3-dehydroquinate synthase
Locus tag
PHATRDRAFT_20809
Gene type
protein coding
RNA name
3-dehydroquinate synthase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Location:
chromosome: 10
Exon count:
2
Sequence:
Chromosome: 10; NC_011678.1 (335277..336725)

Chromosome 10 - NC_011678.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic Sequence:
NC_011678.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-dehydroquinate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aromatic amino acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Names
3-dehydroquinate synthase
XP_002180805.1
  • second step in the shikimate pathway; contains ER signal peptide at the N terminus (SignalP score = 0.995); putatively chloroplast targeted

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011678.1 Reference assembly

    Range
    335277..336725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002180769.1 → XP_002180805.1  3-dehydroquinate synthase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002180805.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G177
    Conserved Domains (1) summary
    PLN02834
    Location:1 → 427
    PLN02834; 3-dehydroquinate synthase
Nucleotide Protein
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