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1600020E01Rik RIKEN cDNA 1600020E01 gene [ Mus musculus (house mouse) ]

Gene ID: 72012, updated on 26-Sep-2022

Summary

Official Symbol
1600020E01Rikprovided by MGI
Official Full Name
RIKEN cDNA 1600020E01 geneprovided by MGI
Primary source
MGI:MGI:1919262
See related
Ensembl:ENSMUSG00000097048 AllianceGenome:MGI:1919262
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in CNS E14 (RPKM 15.2), CNS E18 (RPKM 13.4) and 28 other tissues See more
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Genomic context

See 1600020E01Rik in Genome Data Viewer
Location:
6; 6 D1
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (86504312..86541431)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (86527330..86564449)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52866 Neighboring gene poly(rC) binding protein 1 Neighboring gene aspartic peptidase, retroviral-like 1 Neighboring gene MAX dimerization protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037960.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site near the 5' end compared to variant 1.
    Source sequence(s)
    AA162444, AI448276, AI644794
  2. NR_037961.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AI448276, AK005503
    Related
    ENSMUST00000181928.5

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    86504312..86541431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)