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PHATRDRAFT_45308 ribokinase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7200013, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_45308
Gene description
ribokinase
Locus tag
PHATRDRAFT_45308
Gene type
protein coding
RNA name
ribokinase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 6
Exon count:
1
Sequence:
Chromosome: 6; NC_011674.1 (796615..798744, complement)

Chromosome 6 - NC_011674.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011674.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-ribose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ribokinase
XP_002179509.1
  • Probably catalyzes the reaction: ATP + D-ribose = ADP + D-ribose 5-phosphate

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011674.1 Reference assembly

    Range
    796615..798744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002179473.1 → XP_002179509.1  ribokinase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002179509.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9SY54, B7FX84
    Conserved Domains (3) summary
    COG1082
    Location:398 → 671
    YcjR; Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism]
    cd01174
    Location:32 → 353
    ribokinase; Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides ...
    pfam01261
    Location:425 → 626
    AP_endonuc_2; Xylose isomerase-like TIM barrel
Nucleotide Protein
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