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Lmntd2 lamin tail domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 72000, updated on 31-Jan-2019

Summary

Official Symbol
Lmntd2provided by MGI
Official Full Name
lamin tail domain containing 2provided by MGI
Primary source
MGI:MGI:1919250
See related
Ensembl:ENSMUSG00000025500
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1600016N20Rik
Expression
Biased expression in testis adult (RPKM 95.4), colon adult (RPKM 6.2) and 2 other tissues See more
Orthologs

Genomic context

See Lmntd2 in Genome Data Viewer
Location:
7; 7 F5
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (141209990..141214527, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (148395942..148399979, complement)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene ribosomal protein S9 pseudogene Neighboring gene Harvey rat sarcoma virus oncogene Neighboring gene leucine rich repeat containing 56 Neighboring gene Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 Neighboring gene microRNA 210

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
positive regulation of mRNA splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
lamin tail domain-containing protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347565.1NP_001334494.1  lamin tail domain-containing protein 2 isoform 1

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC108908
    UniProtKB/TrEMBL
    B7ZMW1
  2. NM_028050.2NP_082326.1  lamin tail domain-containing protein 2 isoform 2

    See identical proteins and their annotated locations for NP_082326.1

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    BC119093
    Consensus CDS
    CCDS40181.1
    UniProtKB/Swiss-Prot
    Q0VET5
    Related
    ENSMUSP00000026573.5, ENSMUST00000026573.6
    Conserved Domains (1) summary
    pfam00932
    Location:385477
    LTD; Lamin Tail Domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

    Range
    141209990..141214527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006536256.3XP_006536319.1  lamin tail domain-containing protein 2 isoform X2

    See identical proteins and their annotated locations for XP_006536319.1

    UniProtKB/Swiss-Prot
    Q0VET5
    Conserved Domains (1) summary
    pfam00932
    Location:385477
    LTD; Lamin Tail Domain
  2. XM_011249859.2XP_011248161.1  lamin tail domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011248161.1

    UniProtKB/TrEMBL
    B7ZMW1
    Conserved Domains (1) summary
    pfam00932
    Location:395487
    LTD; Lamin Tail Domain
  3. XM_006536257.3XP_006536320.1  lamin tail domain-containing protein 2 isoform X3

    See identical proteins and their annotated locations for XP_006536320.1

    Conserved Domains (1) summary
    pfam00932
    Location:279371
    LTD; Lamin Tail Domain
  4. XM_017312319.1XP_017167808.1  lamin tail domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    B7ZMW1
    Related
    ENSMUSP00000130905.1, ENSMUST00000170841.8
    Conserved Domains (1) summary
    pfam00932
    Location:395487
    LTD; Lamin Tail Domain
  5. XM_006536258.3XP_006536321.1  lamin tail domain-containing protein 2 isoform X4

    Conserved Domains (1) summary
    pfam00932
    Location:395482
    LTD; Lamin Tail Domain
  6. XM_006536259.3XP_006536322.1  lamin tail domain-containing protein 2 isoform X5

RNA

  1. XR_880984.2 RNA Sequence

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