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PHATRDRAFT_32057 predicted protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7196190, updated on 21-Dec-2023
Gene symbol
PHATRDRAFT_32057
Gene description
predicted protein
Locus tag
PHATRDRAFT_32057
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_011669.1 (1574985..1577664, complement)

Chromosome 1 - NC_011669.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene 1-aminocyclopropane-1-carboxylate synthase Neighboring gene predicted protein Neighboring gene predicted protein

Genomic Sequence:
NC_011669.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphodiester phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Names
predicted protein

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011669.1 Reference assembly

    Range
    1574985..1577664 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002177287.1 → XP_002177323.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002177323.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FQ33
    Conserved Domains (2) summary
    COG0584
    Location:65 → 128
    UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
    cl14615
    Location:44 → 398
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials