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PHATRDRAFT_15968 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7195734, updated on 21-Dec-2023
Gene symbol
PHATRDRAFT_15968
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_15968
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Location:
chromosome: 22
Exon count:
6
Sequence:
Chromosome: 22; NC_011690.1 (468103..472803)

Chromosome 22 - NC_011690.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic Sequence:
NC_011690.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Names
hypothetical protein

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011690.1 Reference assembly

    Range
    468103..472803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002184107.1 → XP_002184143.1  predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002184143.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7GAV1
    Conserved Domains (7) summary
    smart01008
    Location:602 → 709
    Ald_Xan_dh_C; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
    PLN02906
    Location:1 → 1387
    PLN02906; xanthine dehydrogenase
    cd00207
    Location:1 → 64
    fer2; 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis ...
    pfam00941
    Location:244 → 431
    FAD_binding_5; FAD binding domain in molybdopterin dehydrogenase
    pfam01799
    Location:65 → 137
    Fer2_2; [2Fe-2S] binding domain
    pfam02738
    Location:735 → 1306
    Ald_Xan_dh_C2; Molybdopterin-binding domain of aldehyde dehydrogenase
    pfam03450
    Location:441 → 545
    CO_deh_flav_C; CO dehydrogenase flavoprotein C-terminal domain
Nucleotide Protein
Heading Accession and Version

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