U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Borcs6 BLOC-1 related complex subunit 6 [ Mus musculus (house mouse) ]

Gene ID: 71923, updated on 30-Apr-2024

Summary

Official Symbol
Borcs6provided by MGI
Official Full Name
BLOC-1 related complex subunit 6provided by MGI
Primary source
MGI:MGI:1919173
See related
Ensembl:ENSMUSG00000045176 AllianceGenome:MGI:1919173
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2310047M10Rik
Summary
Predicted to enable identical protein binding activity. Predicted to be involved in lysosome localization. Predicted to be located in lysosome and membrane. Predicted to be part of BORC complex. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and immune system. Orthologous to human BORCS6 (BLOC-1 related complex subunit 6). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Borcs6 in Genome Data Viewer
Location:
11 B3; 11 42.33 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (68950601..68952402)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (69059775..69061576)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E2357 Neighboring gene nuclear encoded tRNA trytophan 7 (anticodon CCA) Neighboring gene STARR-positive B cell enhancer ABC_E3962 Neighboring gene aurora kinase B Neighboring gene STARR-positive B cell enhancer ABC_E5237 Neighboring gene STARR-positive B cell enhancer ABC_E7002 Neighboring gene nuclear encoded tRNA isoleucine 4 (anticodon AAT) Neighboring gene nuclear encoded tRNA threonine 7 (anticodon AGT)

Genomic regions, transcripts, and products

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in lysosome localization IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in lysosome localization ISO
Inferred from Sequence Orthology
more info
 
involved_in lysosome localization NAS
Non-traceable Author Statement
more info
PubMed 
involved_in organelle transport along microtubule NAS
Non-traceable Author Statement
more info
PubMed 
involved_in regulation of endosome size NAS
Non-traceable Author Statement
more info
PubMed 
involved_in regulation of lysosome size NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
part_of BORC complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of BORC complex ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasmic side of lysosomal membrane NAS
Non-traceable Author Statement
more info
PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
BLOC-1-related complex subunit 6

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028005.3NP_082281.2  BLOC-1-related complex subunit 6

    See identical proteins and their annotated locations for NP_082281.2

    Status: PROVISIONAL

    Source sequence(s)
    AK151629
    Consensus CDS
    CCDS36190.1
    UniProtKB/Swiss-Prot
    Q3TE21, Q9D6W8
    Related
    ENSMUSP00000059143.3, ENSMUST00000051888.4
    Conserved Domains (1) summary
    pfam10157
    Location:215358
    DUF2365; Uncharacterized conserved protein (DUF2365)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    68950601..68952402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)