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Epgn epithelial mitogen [ Mus musculus (house mouse) ]

Gene ID: 71920, updated on 28-Aug-2018

Summary

Official Symbol
Epgnprovided by MGI
Official Full Name
epithelial mitogenprovided by MGI
Primary source
MGI:MGI:1919170
See related
Ensembl:ENSMUSG00000035020 Vega:OTTMUSG00000026774
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
epigen; 2310069M11Rik
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See Epgn in Genome Data Viewer
Location:
5; 5 E1
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (91027517..91035212)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (91456543..91464238)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene chemokine (C-X-C motif) ligand 2 Neighboring gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like Neighboring gene predicted gene, 19610 Neighboring gene epiregulin Neighboring gene amphiregulin

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
epidermal growth factor receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
epidermal growth factor receptor binding IDA
Inferred from Direct Assay
more info
PubMed 
epidermal growth factor receptor binding ISO
Inferred from Sequence Orthology
more info
 
growth factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
growth factor activity IDA
Inferred from Direct Assay
more info
PubMed 
growth factor activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053087.2NP_444317.1  epigen precursor

    See identical proteins and their annotated locations for NP_444317.1

    Status: PROVISIONAL

    Source sequence(s)
    AC109311
    Consensus CDS
    CCDS19419.1
    UniProtKB/Swiss-Prot
    Q924X1
    UniProtKB/TrEMBL
    Q0VEB7
    Related
    ENSMUSP00000046987.8, OTTMUSP00000033147, ENSMUST00000041516.8, OTTMUST00000066213
    Conserved Domains (2) summary
    PHA02887
    Location:5499
    PHA02887; EGF-like protein; Provisional
    pfam14986
    Location:109135
    DUF4514; Domain of unknown function (DUF4514)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

    Range
    91027517..91035212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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