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Fam217a family with sequence similarity 217, member A [ Mus musculus (house mouse) ]

Gene ID: 71864, updated on 31-Jan-2019

Summary

Official Symbol
Fam217aprovided by MGI
Official Full Name
family with sequence similarity 217, member Aprovided by MGI
Primary source
MGI:MGI:1919114
See related
Ensembl:ENSMUSG00000021414
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700026J04Rik
Expression
Restricted expression toward testis adult (RPKM 34.4) See more
Orthologs

Genomic context

See Fam217a in Genome Data Viewer
Location:
13; 13 A3.3
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (34909959..34924358, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (35001833..35011861, complement)

Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 36839 Neighboring gene pre-mRNA processing factor 4B Neighboring gene RIKEN cDNA 4933417A18 gene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene enoyl-Coenzyme A delta isomerase 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
protein FAM217A
Names
uncharacterized protein C6orf146 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027967.1NP_082243.1  protein FAM217A

    Status: VALIDATED

    Source sequence(s)
    AK006388, AK139828
    Consensus CDS
    CCDS56875.1
    UniProtKB/Swiss-Prot
    Q9D9W6
    UniProtKB/TrEMBL
    F8WGE0, Q3UT29
    Related
    ENSMUSP00000021851.6, ENSMUST00000021851.7
    Conserved Domains (1) summary
    pfam15344
    Location:206409
    FAM217; FAM217 family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

    Range
    34909959..34924358 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516783.3XP_006516846.1  protein FAM217A isoform X2

    UniProtKB/TrEMBL
    A0A286YD65
    Related
    ENSMUSP00000153297.1, ENSMUST00000223834.1
    Conserved Domains (1) summary
    pfam15344
    Location:358561
    FAM217; FAM217 family
  2. XM_006516782.3XP_006516845.1  protein FAM217A isoform X1

    Conserved Domains (1) summary
    pfam15344
    Location:359562
    FAM217; FAM217 family
  3. XM_006516785.3XP_006516848.1  protein FAM217A isoform X4

    Conserved Domains (1) summary
    pfam15344
    Location:266469
    FAM217; FAM217 family
  4. XM_006516784.3XP_006516847.1  protein FAM217A isoform X3

    Conserved Domains (1) summary
    pfam15344
    Location:267470
    FAM217; FAM217 family
  5. XM_006516786.3XP_006516849.1  protein FAM217A isoform X5

    Related
    ENSMUSP00000153128.1, ENSMUST00000225242.1
    Conserved Domains (1) summary
    pfam15344
    Location:207410
    FAM217; FAM217 family
  6. XM_011244351.1XP_011242653.1  protein FAM217A isoform X7

  7. XM_011244350.1XP_011242652.1  protein FAM217A isoform X6

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