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Shcbp1l Shc SH2-domain binding protein 1-like [ Mus musculus (house mouse) ]

Gene ID: 71836, updated on 31-Jan-2019

Summary

Official Symbol
Shcbp1lprovided by MGI
Official Full Name
Shc SH2-domain binding protein 1-likeprovided by MGI
Primary source
MGI:MGI:1919086
See related
Ensembl:ENSMUSG00000042708
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700012A16Rik
Expression
Biased expression in testis adult (RPKM 27.7) and cerebellum adult (RPKM 0.6) See more
Orthologs

Genomic context

See Shcbp1l in Genome Data Viewer
Location:
1; 1 G3
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (153425096..153452574)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (155272339..155299704)

Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 46246 Neighboring gene Riken cDNA E330020D12 gene Neighboring gene nuclear encoded tRNA isoleucine 13 (anticodon TAT) Neighboring gene DEAH (Asp-Glu-Ala-His) box polypeptide 9 Neighboring gene predicted gene, 46164 Neighboring gene N-acetylneuraminate pyruvate lyase

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Homology

Clone Names

  • MGC130601

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
positive regulation of chromosome organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
spermatogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
meiotic spindle IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
testicular spindle-associated protein SHCBP1L
Names
SHC SH2 domain-binding protein 1-like protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033162.2NP_001028334.1  testicular spindle-associated protein SHCBP1L

    See identical proteins and their annotated locations for NP_001028334.1

    Status: PROVISIONAL

    Source sequence(s)
    AK161274
    Consensus CDS
    CCDS15372.1
    UniProtKB/Swiss-Prot
    Q3TTP0
    Related
    ENSMUSP00000036347.5, ENSMUST00000042373.11
    Conserved Domains (1) summary
    pfam13229
    Location:472580
    Beta_helix; Right handed beta helix region

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

    Range
    153425096..153452574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006529876.3XP_006529939.1  testicular spindle-associated protein SHCBP1L isoform X1

    Conserved Domains (1) summary
    PHA03247
    Location:4124
    PHA03247; large tegument protein UL36; Provisional

RNA

  1. XR_387195.3 RNA Sequence

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