Format

Send to:

Choose Destination

Cdc40 cell division cycle 40 [ Mus musculus (house mouse) ]

Gene ID: 71713, updated on 3-Jun-2018
Official Symbol
Cdc40provided by MGI
Official Full Name
cell division cycle 40provided by MGI
Primary source
MGI:MGI:1918963
See related
Ensembl:ENSMUSG00000038446 Vega:OTTMUSG00000063435
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EHB3; PRP17; 1200003H23Rik
Expression
Ubiquitous expression in CNS E11.5 (RPKM 9.4), placenta adult (RPKM 7.2) and 28 other tissues See more
Orthologs
See Cdc40 in Genome Data Viewer
Location:
10; 10 B1
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (40831621..40883143, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (40552699..40602949, complement)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene D-aspartate oxidase Neighboring gene methyltransferase like 24 Neighboring gene WAS protein family, member 1 Neighboring gene sperm motility kinase-like

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
U2-type catalytic step 2 spliceosome ISO
Inferred from Sequence Orthology
more info
 
catalytic step 2 spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
catalytic step 2 spliceosome ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
pre-mRNA-processing factor 17
Names
PRP17 homolog
cell division cycle 40 homolog

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027879.2NP_082155.1  pre-mRNA-processing factor 17

    See identical proteins and their annotated locations for NP_082155.1

    Status: VALIDATED

    Source sequence(s)
    AA163414, AK004569, BC158078, BE691319
    Consensus CDS
    CCDS48546.1
    UniProtKB/Swiss-Prot
    Q9DC48
    Related
    ENSMUSP00000044305.7, OTTMUSP00000079901, ENSMUST00000044166.8, OTTMUST00000154555
    Conserved Domains (2) summary
    cd00200
    Location:281579
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:292330
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

    Range
    40831621..40883143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center