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Atp5pd ATP synthase peripheral stalk subunit d [ Mus musculus (house mouse) ]

Gene ID: 71679, updated on 5-Jul-2025
Official Symbol
Atp5pdprovided by MGI
Official Full Name
ATP synthase peripheral stalk subunit dprovided by MGI
Primary source
MGI:MGI:1918929
See related
Ensembl:ENSMUSG00000034566 AllianceGenome:MGI:1918929
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Atp5h; 0610009D10Rik
Summary
Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in proton motive force-driven mitochondrial ATP synthesis. Located in mitochondrion. Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Orthologous to human ATP5PD (ATP synthase peripheral stalk subunit d). [provided by Alliance of Genome Resources, Jul 2025]
Expression
Ubiquitous expression in heart adult (RPKM 94.5), CNS E11.5 (RPKM 81.5) and 25 other tissues See more
Orthologs
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See Atp5pd in Genome Data Viewer
Location:
11 E2; 11 80.84 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (115306517..115310775, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (115415691..115419919, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7095 Neighboring gene nuclear encoded tRNA arginine 3 (anticodon CCT) Neighboring gene nuclear encoded tRNA arginine 4 (anticodon TCG) Neighboring gene STARR-positive B cell enhancer ABC_E1435 Neighboring gene potassium channel tetramerisation domain containing 2 Neighboring gene tripartite motif-containing 80 Neighboring gene microRNA 3968

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 
involved_in proton motive force-driven ATP synthesis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
 
involved_in proton motive force-driven mitochondrial ATP synthesis IEA
Inferred from Electronic Annotation
more info
 
involved_in proton motive force-driven mitochondrial ATP synthesis ISO
Inferred from Sequence Orthology
more info
 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrial inner membrane HDA PubMed 
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrial inner membrane ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion HDA PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
located_in myelin sheath HDA PubMed 
part_of proton-transporting ATP synthase complex IEA
Inferred from Electronic Annotation
more info
 
part_of proton-transporting ATP synthase complex ISO
Inferred from Sequence Orthology
more info
 
part_of proton-transporting ATP synthase complex ISS
Inferred from Sequence or Structural Similarity
more info
 
Preferred Names
ATP synthase peripheral stalk subunit d, mitochondrial
Names
ATP synthase subunit d, mitochondrial
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
ATPase subunit d
NP_001404861.1
NP_001404862.1
NP_001404863.1
NP_082138.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417932.1NP_001404861.1  ATP synthase peripheral stalk subunit d, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    AL627096
    UniProtKB/Swiss-Prot
    B1ASE1, Q542H1, Q7M0I0, Q91YK9, Q9DCX2
    UniProtKB/TrEMBL
    B1ASE2
    Related
    ENSMUSP00000121240.2, ENSMUST00000137754.2
  2. NM_001417933.1NP_001404862.1  ATP synthase peripheral stalk subunit d, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    AL627096
    UniProtKB/Swiss-Prot
    B1ASE1, Q542H1, Q7M0I0, Q91YK9, Q9DCX2
    UniProtKB/TrEMBL
    B1ASE2
    Related
    ENSMUSP00000102147.2, ENSMUST00000106537.8
  3. NM_001417934.1NP_001404863.1  ATP synthase peripheral stalk subunit d, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    AL627096
    UniProtKB/Swiss-Prot
    B1ASE1, Q542H1, Q7M0I0, Q91YK9, Q9DCX2
    UniProtKB/TrEMBL
    B1ASE2
  4. NM_027862.2NP_082138.1  ATP synthase peripheral stalk subunit d, mitochondrial

    See identical proteins and their annotated locations for NP_082138.1

    Status: VALIDATED

    Source sequence(s)
    AL627096
    Consensus CDS
    CCDS25633.1
    UniProtKB/Swiss-Prot
    B1ASE1, Q542H1, Q7M0I0, Q91YK9, Q9DCX2
    UniProtKB/TrEMBL
    B1ASE2
    Related
    ENSMUSP00000046256.3, ENSMUST00000043931.9
    Conserved Domains (1) summary
    pfam05873
    Location:3155
    Mt_ATP-synt_D; ATP synthase D chain, mitochondrial (ATP5H)

RNA

  1. NR_184656.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL627096

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    115306517..115310775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)