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WDTC1 WD and tetratricopeptide repeats 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 715790, updated on 17-Aug-2024

Summary

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Official Symbol
WDTC1provided by VGNC
Official Full Name
WD and tetratricopeptide repeats 1provided by VGNC
Primary source
VGNC:VGNC:79784
Locus tag
EGK_00435
See related
Ensembl:ENSMMUG00000004762
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See WDTC1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (197426490..197508152, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (26120703..26173736)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin like 1 Neighboring gene actin, muscle-like Neighboring gene U6 spliceosomal RNA Neighboring gene transmembrane protein 222 Neighboring gene uncharacterized LOC106997197 Neighboring gene 60S ribosomal protein L18a pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD and tetratricopeptide repeats protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    197426490..197508152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028837434.1 → XP_028693267.1  WD and tetratricopeptide repeats protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A5F8AU17
    Conserved Domains (5) summary
    PLN03088
    Location:368 → 438
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    COG2319
    Location:42 → 349
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:366 → 390
    TPR; TPR repeat [structural motif]
    sd00039
    Location:51 → 88
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:34 → 163
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_028837432.1 → XP_028693265.1  WD and tetratricopeptide repeats protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZV41, F6SM88
    Related
    ENSMMUP00000006331.3, ENSMMUT00000006729.4
    Conserved Domains (5) summary
    PLN03088
    Location:368 → 438
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    COG2319
    Location:42 → 349
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:366 → 390
    TPR; TPR repeat [structural motif]
    sd00039
    Location:51 → 88
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:34 → 163
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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