U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SF3A1 splicing factor 3a subunit 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 715552, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
SF3A1provided by VGNC
Official Full Name
splicing factor 3a subunit 1provided by VGNC
Primary source
VGNC:VGNC:77177
Locus tag
EGK_02932
See related
Ensembl:ENSMMUG00000005547
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SF3A1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (21188825..21212279)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (72171772..72195214, complement)

Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 215 Neighboring gene coiled-coil domain containing 157 Neighboring gene TBC1 domain family member 10A Neighboring gene cytosolic arginine sensor for mTORC1 subunit 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
splicing factor 3A subunit 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001257699.1 → NP_001244628.1  splicing factor 3A subunit 1

    See identical proteins and their annotated locations for NP_001244628.1

    Status: PROVISIONAL

    Source sequence(s)
    JU320754
    UniProtKB/TrEMBL
    A0A8J8YIF7, F6T8A2, F7GEU6, G7N3K6
    Related
    ENSMMUP00000007333.2, ENSMMUT00000007806.4
    Conserved Domains (5) summary
    cd01800
    Location:718 → 793
    SF3a120_C; Ubiquitin-like domain of Mammalian splicing factor SF3a_120
    smart00648
    Location:50 → 103
    SWAP; Suppressor-of-White-APricot splicing regulator
    smart00213
    Location:718 → 786
    UBQ; Ubiquitin homologues
    pfam01805
    Location:165 → 215
    Surp; Surp module
    pfam12230
    Location:229 → 471
    PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041763.1 Reference Mmul_10 Primary Assembly

    Range
    21188825..21212279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials