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EFTUD2 elongation factor Tu GTP binding domain containing 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 715512, updated on 17-Aug-2024

Summary

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Official Symbol
EFTUD2provided by VGNC
Official Full Name
elongation factor Tu GTP binding domain containing 2provided by VGNC
Primary source
VGNC:VGNC:72149
Locus tag
EGK_08817
See related
Ensembl:ENSMMUG00000013118
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See EFTUD2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
30
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (56119603..56163324, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (50740759..50784443, complement)

Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene gap junction protein gamma 1 Neighboring gene HIG1 hypoxia inducible domain family member 1B Neighboring gene coiled-coil domain containing 103 Neighboring gene family with sequence similarity 187 member A Neighboring gene glial fibrillary acidic protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U5 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
116 kDa U5 small nuclear ribonucleoprotein component

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041769.1 Reference Mmul_10 Primary Assembly

    Range
    56119603..56163324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015119885.2 → XP_014975371.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X1

    UniProtKB/TrEMBL
    A0A663DIA2, A0A8J8XIA2, F6ZMM3, G7NIZ0
    Related
    ENSMMUP00000017238.3, ENSMMUT00000018410.4
    Conserved Domains (2) summary
    cl30786
    Location:122 → 954
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:4 → 110
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

  2. XM_001114964.4 → XP_001114964.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X2

    See identical proteins and their annotated locations for XP_001114964.1

    UniProtKB/TrEMBL
    A0A1D5R732
    Related
    ENSMMUP00000056120.2, ENSMMUT00000075390.2
    Conserved Domains (2) summary
    cl30786
    Location:87 → 919
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:19 → 75
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

  3. XM_015119887.2 → XP_014975373.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X1

    UniProtKB/TrEMBL
    A0A663DIA2, A0A8J8XIA2, F6ZMM3, G7NIZ0
    Conserved Domains (2) summary
    cl30786
    Location:122 → 954
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:4 → 110
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

  4. XM_015119888.2 → XP_014975374.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X1

    UniProtKB/TrEMBL
    A0A663DIA2, A0A8J8XIA2, F6ZMM3, G7NIZ0
    Conserved Domains (2) summary
    cl30786
    Location:122 → 954
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:4 → 110
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

  5. XM_028836603.1 → XP_028692436.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X3

    Conserved Domains (2) summary
    pfam16004
    Location:4 → 110
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus
    cl30786
    Location:122 → 782
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
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