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Cage1 cancer antigen 1 [ Mus musculus (house mouse) ]

Gene ID: 71213, updated on 12-Aug-2019

Summary

Official Symbol
Cage1provided by MGI
Official Full Name
cancer antigen 1provided by MGI
Primary source
MGI:MGI:1918463
See related
Ensembl:ENSMUSG00000044566
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ctag3; 4933427I01Rik
Expression
Biased expression in testis adult (RPKM 17.1) and genital fat pad adult (RPKM 0.4) See more
Orthologs

Genomic context

See Cage1 in Genome Data Viewer
Location:
13 A3.3; 13
Exon count:
16
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (38006052..38037131, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (38097921..38128806, complement)

Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene ras responsive element binding protein 1 Neighboring gene predicted gene, 46411 Neighboring gene predicted gene, 52041 Neighboring gene signal sequence receptor, alpha Neighboring gene RIO kinase 1 Neighboring gene desmoplakin Neighboring gene small nuclear ribonucleoprotein 48 (U11/U12)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

General gene information

Homology

Clone Names

  • MGC100323

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
cancer-associated gene 1 protein homolog
Names
CAGE-1
CT3 homolog
cancer/testis antigen 3 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027724.2NP_082000.2  cancer-associated gene 1 protein homolog

    See identical proteins and their annotated locations for NP_082000.2

    Status: VALIDATED

    Source sequence(s)
    AK016953, AY695827, BC082568, BX519141
    Consensus CDS
    CCDS26460.1
    UniProtKB/Swiss-Prot
    Q5IR70
    Related
    ENSMUSP00000074499.4, ENSMUST00000074969.10
    Conserved Domains (2) summary
    pfam15066
    Location:1526
    CAGE1; Cancer-associated gene protein 1 family
    cl23943
    Location:449529
    PCRF; PCRF domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000079.6 Reference GRCm38.p6 C57BL/6J

    Range
    38006052..38037131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516779.4XP_006516842.1  cancer-associated gene 1 protein homolog isoform X4

    Conserved Domains (3) summary
    COG0419
    Location:308748
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam15066
    Location:1526
    CAGE1; Cancer-associated gene protein 1 family
    cl23943
    Location:449529
    PCRF; PCRF domain
  2. XM_006516776.4XP_006516839.1  cancer-associated gene 1 protein homolog isoform X2

    See identical proteins and their annotated locations for XP_006516839.1

    UniProtKB/Swiss-Prot
    Q5IR70
    Related
    ENSMUSP00000105862.1, ENSMUST00000110233.7
    Conserved Domains (2) summary
    pfam15066
    Location:1526
    CAGE1; Cancer-associated gene protein 1 family
    cl23943
    Location:449529
    PCRF; PCRF domain
  3. XM_017315602.2XP_017171091.1  cancer-associated gene 1 protein homolog isoform X1

  4. XM_017315603.2XP_017171092.1  cancer-associated gene 1 protein homolog isoform X1

  5. XM_017315604.2XP_017171093.1  cancer-associated gene 1 protein homolog isoform X3

  6. XM_030247409.1XP_030103269.1  cancer-associated gene 1 protein homolog isoform X7

  7. XM_017315605.2XP_017171094.1  cancer-associated gene 1 protein homolog isoform X6

  8. XM_030247408.1XP_030103268.1  cancer-associated gene 1 protein homolog isoform X6

  9. XM_030247410.1XP_030103270.1  cancer-associated gene 1 protein homolog isoform X7

  10. XM_011244349.3XP_011242651.2  cancer-associated gene 1 protein homolog isoform X5

RNA

  1. XR_003950483.1 RNA Sequence

  2. XR_001780816.2 RNA Sequence

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