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Sntg1 syntrophin, gamma 1 [ Mus musculus (house mouse) ]

Gene ID: 71096, updated on 5-Jan-2023

Summary

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Official Symbol
Sntg1provided by MGI
Official Full Name
syntrophin, gamma 1provided by MGI
Primary source
MGI:MGI:1918346
See related
Ensembl:ENSMUSG00000025909 AllianceGenome:MGI:1918346
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SYN4; G1SYN; 4933426D16Rik
Summary
Predicted to enable protein C-terminus binding activity. Predicted to be located in cytoplasm; cytoskeleton; and ruffle membrane. Predicted to be part of dystrophin-associated glycoprotein complex. Orthologous to human SNTG1 (syntrophin gamma 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cortex adult (RPKM 1.7), frontal lobe adult (RPKM 1.4) and 6 other tissues See more
Orthologs
human all
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Genomic context

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See Sntg1 in Genome Data Viewer
Location:
1; 1 A1- A2
Exon count:
25
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (8429963..9371882, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (8359739..9301657, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene F-box protein 5 pseudogene Neighboring gene predicted gene, 39589 Neighboring gene CDC28 protein kinase regulatory subunit 2 pseudogene Neighboring gene RING-box protein 2 pseudogene Neighboring gene RING-box protein 2 pseudogene Neighboring gene mitochondrial import inner membrane translocase subunit Tim23 pseudogene Neighboring gene predicted gene, 30719 Neighboring gene predicted gene 6187

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. gamma-Syntrophin scaffolding is spatially and functionally distinct from that of the alpha/beta syntrophins. Alessi A, et al. Exp Cell Res, 2006 Oct 1. PMID 16857187
  2. Blood pressure is regulated by an alpha1D-adrenergic receptor/dystrophin signalosome. Lyssand JS, et al. J Biol Chem, 2008 Jul 4. PMID 18468998, Free PMC Article
  3. High-throughput mapping of a dynamic signaling network in mammalian cells. Barrios-Rodiles M, et al. Science, 2005 Mar 11. PMID 15761153
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
  
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in cytoskeleton ISO
Inferred from Sequence Orthology
more info
  
part_of dystrophin-associated glycoprotein complex IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
is_active_in intracellular anatomical structure IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in ruffle membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
gamma-1-syntrophin
Names
syntrophin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290390.1 → NP_001277319.1  gamma-1-syntrophin isoform 2

    See identical proteins and their annotated locations for NP_001277319.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The encoded protein (isoform 2) is shorter than isoform 1.
    Source sequence(s)
    AC102786, AK038698, AK083241, CJ254355
    Consensus CDS
    CCDS69860.1
    UniProtKB/TrEMBL
    Q8C415, Q8CAI8
    Related
    ENSMUSP00000141839.2, ENSMUST00000191683.6
    Conserved Domains (2) summary
    smart00233
    Location:283 → 388
    PH; Pleckstrin homology domain
    cd00992
    Location:55 → 135
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. NM_001290392.1 → NP_001277321.1  gamma-1-syntrophin isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to isoform 1. The encoded protein (isoform 3) has a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AC102786, AK038698, AK083241, CJ254355
    UniProtKB/TrEMBL
    Q8C415, Q8CAI8
    Conserved Domains (1) summary
    smart00233
    Location:32 → 137
    PH; Pleckstrin homology domain

  3. NM_001290393.1 → NP_001277322.1  gamma-1-syntrophin isoform 1

    See identical proteins and their annotated locations for NP_001277322.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, compared to variant 1. Variants 1 and 4 encode the same protein (isoform 1).
    Source sequence(s)
    AC102786, AF367759, AK038698, AK080034, AK083241, CJ254355
    Consensus CDS
    CCDS35509.1
    UniProtKB/Swiss-Prot
    Q925E1
    UniProtKB/TrEMBL
    E9Q0U6, Q8BNW6, Q8C415, Q8CAI8
    Conserved Domains (2) summary
    smart00233
    Location:284 → 389
    PH; Pleckstrin homology domain
    cd00992
    Location:55 → 136
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  4. NM_027671.5 → NP_081947.2  gamma-1-syntrophin isoform 1

    See identical proteins and their annotated locations for NP_081947.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Variants 1 and 4 encode the same protein.
    Source sequence(s)
    AC102786, AK038698, AK080034, AK083241, CJ254355
    Consensus CDS
    CCDS35509.1
    UniProtKB/TrEMBL
    E9Q0U6, Q8BNW6, Q8C415, Q8CAI8
    Related
    ENSMUSP00000118101.3, ENSMUST00000140295.8
    Conserved Domains (2) summary
    smart00233
    Location:284 → 389
    PH; Pleckstrin homology domain
    cd00992
    Location:55 → 136
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    8429963..9371882 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036153661.1 → XP_036009554.1  gamma-1-syntrophin isoform X5

    Conserved Domains (2) summary
    smart00233
    Location:236 → 341
    PH; Pleckstrin homology domain
    cd00992
    Location:7 → 88
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_036153666.1 → XP_036009559.1  gamma-1-syntrophin isoform X7

    Conserved Domains (1) summary
    smart00233
    Location:32 → 137
    PH; Pleckstrin homology domain

  3. XM_036153660.1 → XP_036009553.1  gamma-1-syntrophin isoform X4

    Conserved Domains (2) summary
    smart00233
    Location:270 → 375
    PH; Pleckstrin homology domain
    cd00992
    Location:55 → 135
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  4. XM_017312321.2 → XP_017167810.1  gamma-1-syntrophin isoform X2

    UniProtKB/TrEMBL
    Q8C415
    Related
    ENSMUSP00000122134.2, ENSMUST00000132064.8
    Conserved Domains (2) summary
    smart00233
    Location:283 → 388
    PH; Pleckstrin homology domain
    cd00992
    Location:55 → 135
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  5. XM_006495572.3 → XP_006495635.1  gamma-1-syntrophin isoform X3

    Conserved Domains (2) summary
    smart00233
    Location:271 → 376
    PH; Pleckstrin homology domain
    cd00992
    Location:55 → 136
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  6. XM_036153664.1 → XP_036009557.1  gamma-1-syntrophin isoform X7

    Conserved Domains (1) summary
    smart00233
    Location:32 → 137
    PH; Pleckstrin homology domain

  7. XM_036153658.1 → XP_036009551.1  gamma-1-syntrophin isoform X2

    UniProtKB/TrEMBL
    Q8C415
    Conserved Domains (2) summary
    smart00233
    Location:283 → 388
    PH; Pleckstrin homology domain
    cd00992
    Location:55 → 135
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  8. XM_011238407.3 → XP_011236709.1  gamma-1-syntrophin isoform X1

    See identical proteins and their annotated locations for XP_011236709.1

    UniProtKB/TrEMBL
    E9Q0U6, Q8BNW6
    Conserved Domains (2) summary
    smart00233
    Location:284 → 389
    PH; Pleckstrin homology domain
    cd00992
    Location:55 → 136
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  9. XM_036153662.1 → XP_036009555.1  gamma-1-syntrophin isoform X5

    Conserved Domains (2) summary
    smart00233
    Location:236 → 341
    PH; Pleckstrin homology domain
    cd00992
    Location:7 → 88
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  10. XM_017312320.3 → XP_017167809.1  gamma-1-syntrophin isoform X1

    UniProtKB/TrEMBL
    E9Q0U6, Q8BNW6
    Related
    ENSMUSP00000111151.3, ENSMUST00000115488.3
    Conserved Domains (2) summary
    smart00233
    Location:284 → 389
    PH; Pleckstrin homology domain
    cd00992
    Location:55 → 136
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  11. XM_036153663.1 → XP_036009556.1  gamma-1-syntrophin isoform X6

    Conserved Domains (2) summary
    smart00233
    Location:191 → 264
    PH; Pleckstrin homology domain
    cd00992
    Location:55 → 136
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RNA

  1. XR_001778003.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q925E1.2 GenPept UniProtKB/Swiss-Prot:Q925E1

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