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4933405L10Rik RIKEN cDNA 4933405L10 gene [ Mus musculus (house mouse) ]

Gene ID: 71046, updated on 5-Mar-2024

Summary

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Official Symbol
4933405L10Rikprovided by MGI
Official Full Name
RIKEN cDNA 4933405L10 geneprovided by MGI
Primary source
MGI:MGI:1918296
See related
Ensembl:ENSMUSG00000013158 AllianceGenome:MGI:1918296
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in gonad. Orthologous to human C16orf86 (chromosome 16 open reading frame 86). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 23.7) See more
Orthologs
human all
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Genomic context

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Location:
8 D3; 8 53.04 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (106434921..106436877)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (105708289..105710245)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene capping protein regulator and myosin 1 linker 2 Neighboring gene STARR-positive B cell enhancer ABC_E3798 Neighboring gene STARR-positive B cell enhancer ABC_E6678 Neighboring gene par-6 family cell polarity regulator alpha Neighboring gene adrenocortical dysplasia Neighboring gene enkurin domain containing 1 Neighboring gene glucose-fructose oxidoreductase domain containing 2 Neighboring gene STARR-positive B cell enhancer ABC_E8850 Neighboring gene RAN binding protein 10 Neighboring gene STARR-positive B cell enhancer ABC_E2272 Neighboring gene translin-associated factor X (Tsnax) interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C16orf86 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357256.1 → NP_001344185.1  uncharacterized protein C16orf86 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC152826, BC145093
    Consensus CDS
    CCDS90453.1
    Related
    ENSMUSP00000148838.2, ENSMUST00000211852.2
    Conserved Domains (1) summary
    pfam15762
    Location:1 → 162
    DUF4691; Domain of unknown function (DUF4691)

  2. NM_027655.2 → NP_081931.1  uncharacterized protein C16orf86 homolog isoform 1

    See identical proteins and their annotated locations for NP_081931.1

    Status: VALIDATED

    Source sequence(s)
    AC152826, BC138007
    Consensus CDS
    CCDS52661.1
    UniProtKB/Swiss-Prot
    B7ZN89, Q9D4A5
    Related
    ENSMUSP00000013302.6, ENSMUST00000013302.7
    Conserved Domains (1) summary
    pfam15762
    Location:1 → 162
    DUF4691; Domain of unknown function (DUF4691)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    106434921..106436877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D4A5.1 GenPept UniProtKB/Swiss-Prot:Q9D4A5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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