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4931406C07Rik RIKEN cDNA 4931406C07 gene [ Mus musculus (house mouse) ]

Gene ID: 70984, updated on 3-Feb-2018

Summary

Official Symbol
4931406C07Rikprovided by MGI
Official Full Name
RIKEN cDNA 4931406C07 geneprovided by MGI
Primary source
MGI:MGI:1918234
See related
Ensembl:ENSMUSG00000031938 Vega:OTTMUSG00000062263
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in kidney adult (RPKM 50.7), subcutaneous fat pad adult (RPKM 17.4) and 23 other tissues See more
Orthologs

Genomic context

See 4931406C07Rik in Genome Data Viewer
Location:
9; 9 A2
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (15283337..15306448, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (15087783..15106000, complement)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene V-set and transmembrane domain containing 5 Neighboring gene mediator complex subunit 17 Neighboring gene TATA-box binding protein associated factor, RNA polymerase I, D Neighboring gene predicted gene, 25500 Neighboring gene centrosomal protein 295 Neighboring gene small Cajal body-specific RNA 9

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity, acting on ester bonds ISO
Inferred from Sequence Orthology
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
nuclear body ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ester hydrolase C11orf54 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199484.1NP_001186413.1  ester hydrolase C11orf54 homolog isoform 1

    See identical proteins and their annotated locations for NP_001186413.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, and 3 encode the same protein.
    Source sequence(s)
    AC154296, AK133192, CK384052
    Consensus CDS
    CCDS22835.1
    UniProtKB/Swiss-Prot
    Q91V76
    Related
    ENSMUSP00000136717.1, OTTMUSP00000078739, ENSMUST00000180339.7, OTTMUST00000151879
    Conserved Domains (1) summary
    pfam08925
    Location:21303
    DUF1907; Domain of Unknown Function (DUF1907)
  2. NM_001199485.1NP_001186414.1  ester hydrolase C11orf54 homolog isoform 1

    See identical proteins and their annotated locations for NP_001186414.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has a different 5' UTR segment, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
    Source sequence(s)
    AK016432, AK147073, BY118027, CK384052
    Consensus CDS
    CCDS22835.1
    UniProtKB/Swiss-Prot
    Q91V76
    Related
    ENSMUSP00000136335.1, OTTMUSP00000078741, ENSMUST00000178977.8, OTTMUST00000151881
    Conserved Domains (1) summary
    pfam08925
    Location:21303
    DUF1907; Domain of Unknown Function (DUF1907)
  3. NM_001359258.1NP_001346187.1  ester hydrolase C11orf54 homolog isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and lacks an in-frame exon in the coding region, compared to variant 1. This variant encodes a shorter protein (isoform 2), compared to isoform 1.
    Source sequence(s)
    AC154296
    Conserved Domains (1) summary
    pfam08925
    Location:8270
    DUF1907; Domain of Unknown Function (DUF1907)
  4. NM_133732.3NP_598493.1  ester hydrolase C11orf54 homolog isoform 1

    See identical proteins and their annotated locations for NP_598493.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has a different 5' UTR segment, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
    Source sequence(s)
    AC154296, AK133192, CK384052, CT010296
    Consensus CDS
    CCDS22835.1
    UniProtKB/Swiss-Prot
    Q91V76
    Related
    ENSMUSP00000034414.8, OTTMUSP00000078740, ENSMUST00000034414.9, OTTMUST00000151880
    Conserved Domains (1) summary
    pfam08925
    Location:21303
    DUF1907; Domain of Unknown Function (DUF1907)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

    Range
    15283337..15306448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006510597.3XP_006510660.1  ester hydrolase C11orf54 homolog isoform X2

    UniProtKB/TrEMBL
    A0A1L1SSF8
    Related
    ENSMUSP00000149878.1, OTTMUSP00000078742, ENSMUST00000216955.1, OTTMUST00000151882
    Conserved Domains (1) summary
    pfam08925
    Location:8270
    DUF1907; Domain of Unknown Function (DUF1907)
  2. XM_006510596.2XP_006510659.1  ester hydrolase C11orf54 homolog isoform X1

    See identical proteins and their annotated locations for XP_006510659.1

    UniProtKB/Swiss-Prot
    Q91V76
    Conserved Domains (1) summary
    pfam08925
    Location:21303
    DUF1907; Domain of Unknown Function (DUF1907)
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