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SF3B3 splicing factor 3b subunit 3 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 708939, updated on 17-Aug-2024

Summary

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Official Symbol
SF3B3provided by VGNC
Official Full Name
splicing factor 3b subunit 3provided by VGNC
Primary source
VGNC:VGNC:77181
Locus tag
EGK_12983
See related
Ensembl:ENSMMUG00000017812
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SF3B3 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
26
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (60925002..60978165, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (54728306..54782448)

Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene MTSS I-BAR domain containing 2 Neighboring gene interleukin 34 Neighboring gene small nucleolar RNA SNORD111 Neighboring gene small nucleolar RNA SNORD111 Neighboring gene component of oligomeric golgi complex 4 Neighboring gene fucose kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U2 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 3
Names
Spliceosome-associated protein 130
splicing factor 3b, subunit 3, 130kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041773.1 Reference Mmul_10 Primary Assembly

    Range
    60925002..60978165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001107025.4 → XP_001107025.2  splicing factor 3B subunit 3

    UniProtKB/TrEMBL
    A0A5F8AG95, A0A8J8YJN8, F7DWD3, F7E0T3, G7NQQ5
    Related
    ENSMMUP00000023419.4, ENSMMUT00000025032.4
    Conserved Domains (2) summary
    pfam03178
    Location:863 → 1182
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:76 → 592
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term
Nucleotide Protein
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Gene LinkOut

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